View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17103_low_9 (Length: 204)
Name: NF17103_low_9
Description: NF17103
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17103_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 74; Significance: 4e-34; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 2058395 - 2058484
Alignment:
| Q |
1 |
agcttgtgtgatgatgctttgcagctaagggaatgctttcactcattcaacatccaacacattcctacggtatttatttagtaatttggt |
90 |
Q |
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| T |
2058395 |
agcttgtgtgatgatgctttgcagctaagggaatgttttaactcattcaacatccaactcattcctacggtatttatttagaaatttggt |
2058484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 1e-33
Query Start/End: Original strand, 1 - 73
Target Start/End: Original strand, 2062825 - 2062897
Alignment:
| Q |
1 |
agcttgtgtgatgatgctttgcagctaagggaatgctttcactcattcaacatccaacacattcctacggtat |
73 |
Q |
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| T |
2062825 |
agcttgtgtgatgatgctttgcagctaagggaatgctttcactcattcaacatccaacacattcctacggtat |
2062897 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 101 - 165
Target Start/End: Original strand, 2062896 - 2062960
Alignment:
| Q |
101 |
ataaaaaattagcaccctaacaagttatatattttgttcaatctatgtttacacaattcctaata |
165 |
Q |
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| T |
2062896 |
ataaaaaattagcatcctaacaagttatatattttgttcaatctatgtctacacaattcctaata |
2062960 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 148
Target Start/End: Original strand, 2054613 - 2054675
Alignment:
| Q |
87 |
tggttccaccttgaataaaaaatt-agcaccctaacaagttatatattttgttcaatctatgt |
148 |
Q |
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| T |
2054613 |
tggttccaccttgaataaaaaaatcagcatcctaactagttatatattttgttcaatctatgt |
2054675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 11 - 74
Target Start/End: Original strand, 2054436 - 2054499
Alignment:
| Q |
11 |
atgatgctttgcagctaagggaatgctttcactcattcaacatccaacacattcctacggtatt |
74 |
Q |
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| T |
2054436 |
atgaggctttgcagctgaaggaaagctttcactcattcagcatccaacacattcctagggtatt |
2054499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 2042254 - 2042340
Alignment:
| Q |
1 |
agcttgtgtgatgatgctttgcagctaagggaatgctttcactcattcaacatccaacacattcctacggtatttatttagtaattt |
87 |
Q |
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| T |
2042254 |
agcttatgtgaagaggctttgcagctcatcaattgctttcactcgttcagcatccaacacattcctagggtatttatttagtgattt |
2042340 |
T |
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