View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17104_high_12 (Length: 309)
Name: NF17104_high_12
Description: NF17104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17104_high_12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 8 - 309
Target Start/End: Complemental strand, 7035784 - 7035490
Alignment:
| Q |
8 |
atatcagggacaaatagtgtaattagagatagattggaagat-aaaaaagggaataggttgaacacaaaaagatattgagcataagattcatattttatg |
106 |
Q |
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| T |
7035784 |
atatcagggacaaatagtgtaataagagattgat----agataaaaaaagggaataggttgaacac----agatattgagcataagattcatattttatg |
7035693 |
T |
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| Q |
107 |
caagagttacgcaatgcaaagtcaatagatattgatttcaaacatctcacaattccaaaacaagataactactatgccaccagcacaatatattgctcag |
206 |
Q |
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| T |
7035692 |
caagaattacgcaatgcaaagtcaatagatattgatttcaaacatctcacaattccaaaacaagataactactatgccaccagcacaatatattgctcag |
7035593 |
T |
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| Q |
207 |
ttacataatcatacaaggcttttgttgttgtatatgcctccttggccaacttcatatagtgtagccaataaccaaatttaaaaagttattggatcatatt |
306 |
Q |
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| T |
7035592 |
ttacataatcatacaaggcttttgttgttgtatatgcctccttggccaacttcatatagtgtagccaataaccaaatttaaaaagttattggatcatatt |
7035493 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 184
Target Start/End: Complemental strand, 28094911 - 28094857
Alignment:
| Q |
130 |
aatagatattgatttcaaacatctcacaattccaaaacaagataactactatgcc |
184 |
Q |
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| T |
28094911 |
aatagatattaatttcaaacatctcataattacaaaacaagataattactctgcc |
28094857 |
T |
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