View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17104_high_13 (Length: 308)
Name: NF17104_high_13
Description: NF17104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17104_high_13 |
 |  |
|
Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 25379750 - 25380015
Alignment:
| Q |
18 |
aatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataacaacacttgattaagaagataaaacaatcgtttttg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
25379750 |
aatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataacaacacttgatcaagaagataaaacaatcgtttttg |
25379849 |
T |
 |
| Q |
118 |
aactagtttcaatttattaggatttgattttaggaaatttaaggttttatttaaggatgtatagaacccattgcaatgtctactaaactctatttcnnnn |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
|
|
| T |
25379850 |
aactagtttcaatttattaggatttgattttaggaaatttagggttttatttaaggatgtatataacccattgcaatgtctactaaactctgtttctttt |
25379949 |
T |
 |
| Q |
218 |
nnnaaaaagcttgactcatgttgttgttgttttgaaaaaaggcaaaggggattgattgatccttgaa |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
25379950 |
tttaaaaagcttgactcatgttgttgttgttttg-aaaaaggcaaaggggattgattgatccttgaa |
25380015 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 25483030 - 25483295
Alignment:
| Q |
18 |
aatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataacaacacttgattaagaagataaaacaatcgtttttg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
25483030 |
aatgttcatagaaatgagattaacccataataaaaatcaaaatttttatgaaaatagagaataacaacacttgatcaagaagataaaacaatcgtttttg |
25483129 |
T |
 |
| Q |
118 |
aactagtttcaatttattaggatttgattttaggaaatttaaggttttatttaaggatgtatagaacccattgcaatgtctactaaactctatttcnnnn |
217 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||| ||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
25483130 |
aactagtttcaattgattaggatttgattttaggaattttagggttttatttaaggatatatagaacctattgcaatgtctactaaactctgtttctttt |
25483229 |
T |
 |
| Q |
218 |
nnnaaaaagcttgactcatgttgttgttgttttgaaaaaaggcaaaggggattgattgatccttgaa |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
25483230 |
tttaaaaagcttgactcatgttgttgttgttttg-aaataggcaaaggggattgattgatccttgaa |
25483295 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 42 - 196
Target Start/End: Complemental strand, 17515302 - 17515148
Alignment:
| Q |
42 |
ccataataaaaatcaaaatttctatgaaaatagagaataacaacacttgattaagaagataaaacaatcgtttttgaactagtttcaatttattaggatt |
141 |
Q |
| |
|
|||||||| ||||||||||||| |||||| | |||||| |||||||||||| ||| |||||| | |||||||||||||||||||| ||| ||||| |
|
|
| T |
17515302 |
ccataatagaaatcaaaatttcaatgaaagcaaagaataggaacacttgattaggaact--aaacaaacctttttgaactagtttcaattcattgggatt |
17515205 |
T |
 |
| Q |
142 |
tgattttaggaaatttaagg-ttttatttaaggatg-tatagaacccattgcaatgt |
196 |
Q |
| |
|
||||||||| ||||||| || |||||||| |||||| || |||||||||| |||||| |
|
|
| T |
17515204 |
tgattttagaaaatttagggtttttattttaggatgatacagaacccattacaatgt |
17515148 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 19310098 - 19309833
Alignment:
| Q |
18 |
aatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataacaacacttgattaagaagataaaacaatcgtttttg |
117 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||| ||||||| |
|
|
| T |
19310098 |
aatgatcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataacaacagttgatcaaga-gataaaacaattgtttttg |
19310000 |
T |
 |
| Q |
118 |
aactagtttcaatttattaggatttgattttaggaaatttaaggttttatttaaggatgtatagaacccattgcaatgtctactaaactctatttcnnnn |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19309999 |
aactagtttcaatttattaggatttgattttaggaaatttagggttttatttaaggatgtatagaacccattgcaatgtctactaaactctgtttctttt |
19309900 |
T |
 |
| Q |
218 |
nnnaaaaagcttgactcatgttgttgttgttttgaaaaaaggcaaaggggattgattgatccttgaa |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19309899 |
ttaaaaaagcttgactcatgttgttgttgttttgaaaaaaggcaaaggggattgattgatccttgaa |
19309833 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 25 - 284
Target Start/End: Complemental strand, 10126300 - 10126042
Alignment:
| Q |
25 |
atagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataacaacacttgattaagaagataaaacaatcgtttttgaactagt |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||| ||| ||||||||||||| |
|
|
| T |
10126300 |
atagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataacaacagttgatcaaga-gataaaataattttttttgaactagt |
10126202 |
T |
 |
| Q |
125 |
ttcaatttattaggatttgattttaggaaatttaaggttttatttaaggatgtatagaacccattgcaatgtctactaaactctatttcnnnnnnnaaaa |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||| |||| |||| |
|
|
| T |
10126201 |
ttcaatttattaggatttgattttaggaaatttagggttttatttaaggatgtatataacccattgcaatgtttactaaactctgtttctttttttaaaa |
10126102 |
T |
 |
| Q |
225 |
agcttgactcatgttgttgttgttttgaaaaaaggcaaaggggattgattgatccttgaa |
284 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10126101 |
agtttgactcatgttgttgttgttttgaaaaaaggcaaagggttttgattgatccttgaa |
10126042 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 28247407 - 28247142
Alignment:
| Q |
18 |
aatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataacaacacttgattaagaagataaaacaatcgtttttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||| ||||||| |
|
|
| T |
28247407 |
aatgttcatagaaatgagattaacccgtaataaaaatcaaaatttctatgaaaatagagaataacaacagttgatcaaga-gataaaacaattgtttttg |
28247309 |
T |
 |
| Q |
118 |
aactagtttcaatttattaggatttgattttaggaaatttaaggttttatttaaggatgtatagaacccattgcaatgtctactaaactctatttcnnnn |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||| |||| |
|
|
| T |
28247308 |
aactagtttcaatttattaggatttgattttaggaaatttagggttttatttaaggatgtatataacccattgcaatgtttactaaactctgtttctttt |
28247209 |
T |
 |
| Q |
218 |
nnnaaaaagcttgactcatgttgttgttgttttgaaaaaaggcaaaggggattgattgatccttgaa |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
28247208 |
tttaaaaagcttgactcatgttgttgttgttttgaaaaaaggcaaagggttttgattgatccttgaa |
28247142 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 22 - 284
Target Start/End: Original strand, 11471646 - 11471909
Alignment:
| Q |
22 |
ttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataacaacacttgattaagaagataaaacaatcgtttttgaact |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||| |||||||||| |
|
|
| T |
11471646 |
ttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataacaacggttgatcaaga-gataaaacaattatttttgaact |
11471744 |
T |
 |
| Q |
122 |
agtttcaatttattaggatttgattttaggaaatttaaggttttatttaaggatgtatagaacccattgcaatgtctactaaactctatttc--nnnnnn |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||| |||| |
|
|
| T |
11471745 |
agtttcaatttattaggatttgattttaggaaatttagggttttatttaaggatgtatataacccattgcaatgtttactaaactctgtttctttttttt |
11471844 |
T |
 |
| Q |
220 |
naaaaagcttgactcatgttgttgttgttttgaaaaaaggcaaaggggattgattgatccttgaa |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11471845 |
aaaaaagcttgactcatgttgttgttgttttgaaaaaaggcaaaggggattgattgatccttgaa |
11471909 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 23 - 284
Target Start/End: Complemental strand, 50027273 - 50027008
Alignment:
| Q |
23 |
tcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataacaacacttgattaagaagataaaacaatcgtttttgaacta |
122 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |
|
|
| T |
50027273 |
tcatagaaatgagattaacccaaaataaaa-tcaaaatttatatgaaaatagagaataacaacacttgatcaagaagataaaacaaccgtttttgaacta |
50027175 |
T |
 |
| Q |
123 |
gtttcaatttattaggatttgattttaggaaatttaaggttttatttaaggatgtatagaacccattgcaatgtctac-taaactc-----tatttcnnn |
216 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||| |||||||||||||||| || |||| | ||| |
|
|
| T |
50027174 |
gtttcaatttattaggatttgaatttaggaaatttagggttttatttcaggatgtatagaatccattgcaatgtctacatatactctgtttttttttttt |
50027075 |
T |
 |
| Q |
217 |
nnnnaaaaagcttgactcatgttgttgttgttttgaaaaaaggcaaaggggattgattgatccttgaa |
284 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
50027074 |
tttttttaagcttgactcatgttgttgttgttttg-aaataggcaaaggggattgattgatccttgaa |
50027008 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 38255224 - 38254957
Alignment:
| Q |
18 |
aatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataacaacacttgattaagaagataaaacaatcgtttttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||| ||||||| |
|
|
| T |
38255224 |
aatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataacaacggttgatcaaga-gataaaacaattgtttttg |
38255126 |
T |
 |
| Q |
118 |
aactagtttcaatttattaggatttgattttaggaaatttaaggttttatttaaggatgtatagaacccattgcaatgtctactaaactctatttc--nn |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||| |||| |
|
|
| T |
38255125 |
aactagtttcaatttattaggatttgattttaggaaatttagggttttatttaaggatgtatataacccattgcaatgtttactaaactctgtttctttt |
38255026 |
T |
 |
| Q |
216 |
nnnnnaaaaagcttgactcatgttgttgttgttttgaaaaaaggcaaaggggattgattgatccttgaa |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38255025 |
ttttaaaaaagcttgactcatgttgttgttgttttgaaaaaaggcaaaggggattgattgatccttgaa |
38254957 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 43154319 - 43154586
Alignment:
| Q |
18 |
aatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataacaacacttgattaagaagataaaacaatcgtttttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||| ||||||| |
|
|
| T |
43154319 |
aatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataacaacggttgatcaaga-gataaaacaattgtttttg |
43154417 |
T |
 |
| Q |
118 |
aactagtttcaatttattaggatttgattttaggaaatttaaggttttatttaaggatgtatagaacccattgcaatgtctactaaactctatttc--nn |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||| |||| |
|
|
| T |
43154418 |
aactagtttcaatttattaggatttgattttaggaaatttagggttttatttaaggatgtatataacccattgcaatgtttactaaactctgtttctttt |
43154517 |
T |
 |
| Q |
216 |
nnnnnaaaaagcttgactcatgttgttgttgttttgaaaaaaggcaaaggggattgattgatccttgaa |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43154518 |
ttttaaaaaagcttgactcatgttgttgttgttttgaaaaaaggcaaaggggattgattgatccttgaa |
43154586 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 15022053 - 15021968
Alignment:
| Q |
112 |
tttttgaactagtttcaatttattaggatttgattttaggaaatttaaggttttatttaaggatg-tatagaacccattgcaatgt |
196 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||| ||||||| ||||| |||||||||| |||||||||| ||||||||| |
|
|
| T |
15022053 |
tttttgaactatcttcaattcattaggatttgattttagaaaatttagagttttttttaaggatgatatagaaccccttgcaatgt |
15021968 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 176
Target Start/End: Complemental strand, 23937190 - 23937083
Alignment:
| Q |
68 |
aaaatagagaataacaacacttgattaagaagataaaacaatcgtttttgaactagtttcaatttattaggatttgattttaggaaatttaaggttttat |
167 |
Q |
| |
|
||||||||||||||| |||||| | || ||| |||||| || | |||| ||||||| |||||||||||||| ||||||| ||||||||||| | |||||| |
|
|
| T |
23937190 |
aaaatagagaataactacacttaagtaggaaaataaaataaacctttt-gaactagcttcaatttattagggtttgattataggaaatttaggattttat |
23937092 |
T |
 |
| Q |
168 |
ttaaggatg |
176 |
Q |
| |
|
|| |||||| |
|
|
| T |
23937091 |
tttaggatg |
23937083 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 22492187 - 22491923
Alignment:
| Q |
18 |
aatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataacaacacttgattaagaagataaaacaatcgtttttg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||| ||||||| |
|
|
| T |
22492187 |
aatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaatagcaacactt-atcaagaagataaaacaattgtttttg |
22492089 |
T |
 |
| Q |
118 |
aactagtttcaatttattaggatttgattttaggaaatttaaggttttatttaaggatgtatagaacccattgcaatgtctactaaactctatttcnnnn |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||| ||||||||||| | |||| |
|
|
| T |
22492088 |
aactagtttcaatttattaggatttgattttaggaaatttagagttttatttgaggatgtatagaaccaattgcaatatctactaaactttgtttctttt |
22491989 |
T |
 |
| Q |
218 |
nnnaaaaagcttgactcatgttgttgttgttttgaaaaaaggcaaaggggattgattgatccttgaa |
284 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||| |
|
|
| T |
22491988 |
tttaaaaagtttgactcatgttgttgttgttttg-aaataggcaaaggggattgattgattcttgaa |
22491923 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 42 - 196
Target Start/End: Original strand, 37163139 - 37163293
Alignment:
| Q |
42 |
ccataataaaaatcaaaatttctatgaaaatagagaataacaacacttgattaagaagataaaacaatcgtttttgaactagtttcaatttattaggatt |
141 |
Q |
| |
|
|||||||| ||||||||||||| |||||| | |||||| |||||||||||| ||| | |||||| | |||||||||||||||||||| ||| ||||| |
|
|
| T |
37163139 |
ccataatagaaatcaaaatttcaatgaaaggaaagaataggaacacttgattaggaaca--aaacaaacctttttgaactagtttcaattcattgggatt |
37163236 |
T |
 |
| Q |
142 |
tgattttaggaaatttaagg-ttttatttaaggatg-tatagaacccattgcaatgt |
196 |
Q |
| |
|
||||||||||||||||| || ||||||| ||||||| || | ||||||||||||||| |
|
|
| T |
37163237 |
tgattttaggaaatttagggtttttattgaaggatgatacataacccattgcaatgt |
37163293 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 161; Significance: 7e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 48793116 - 48793377
Alignment:
| Q |
18 |
aatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataacaacacttgattaagaagataaaacaatcgtttttg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
48793116 |
aatgttcatagaaatgagattaacccataaaaaaaa-caaattttctatgaaaatagagaataacaacacttgatcaagaagataaaataatcgtttttg |
48793214 |
T |
 |
| Q |
118 |
aactagtttcaatttattaggatttgattttaggaaatttaaggttttatttaaggatgtatagaacccattgcaatgtctactaaactctatttc-nnn |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || | |||||||| |||| |
|
|
| T |
48793215 |
aactagtttcaatttattaggatttgattttaggaaatttagggttttatttaaggatgtatagaacccattgca---tcca-taaactctgtttctttt |
48793310 |
T |
 |
| Q |
217 |
nnnnaaaaagcttgactcatgttgttgttgttttgaaaaaaggcaaaggggattgattgatccttgaa |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||| ||||||| |
|
|
| T |
48793311 |
tttaaaaaagcttgactcatgttgttgttgttttg-aaataggcaaacgggattgattgacccttgaa |
48793377 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 26283635 - 26283525
Alignment:
| Q |
18 |
aatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataacaacacttgattaagaagataaaacaatcgtttttg |
117 |
Q |
| |
|
|||| |||||| |||||||| || |||| || ||||| ||||||| | ||||||||||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
26283635 |
aatgctcataggaatgagatcaaaccatgattaaaattaaaatttaaacaaaaatagagaataacaacacttgatcaagaagataaaacaaacgtttttg |
26283536 |
T |
 |
| Q |
118 |
aactagtttca |
128 |
Q |
| |
|
|||||| |||| |
|
|
| T |
26283535 |
aactagcttca |
26283525 |
T |
 |
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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