View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17104_high_16 (Length: 296)
Name: NF17104_high_16
Description: NF17104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17104_high_16 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 97 - 287
Target Start/End: Complemental strand, 39524512 - 39524322
Alignment:
| Q |
97 |
ttaaacctacgcaagagagagaattttaatacacgtggcttgttgctgtgataggggaacagtaagaactgtgtgtatggtactgtaggcaagtctattc |
196 |
Q |
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| T |
39524512 |
ttaaacctacgcaagagagagaattttaatacacgtggcttgttgttgtgataggggaacagtaagaactgtgtgtatggtactgtaggcaagtctattc |
39524413 |
T |
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| Q |
197 |
caaaactaaaacccctttgtaacgattgttaccatcccttccaaccttcttcacgttccttctcctaaaaccctaaaaatggcgtctctgc |
287 |
Q |
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| T |
39524412 |
caaaactaaaactcctttgtaacgattgttcccatcccttccaaccttcttcacgttccttctcctaaaaccctaaaaatggcgtctctgc |
39524322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 39525740 - 39525679
Alignment:
| Q |
1 |
ttcccgatttctcatagatttttcaattttatttgattctcgtaggttttataacggtttaacc |
64 |
Q |
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| T |
39525740 |
ttcccgatttctca--gatttttcaattttatttgattctcgtaggttttataacggtttaacc |
39525679 |
T |
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