View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17104_high_22 (Length: 251)
Name: NF17104_high_22
Description: NF17104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17104_high_22 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 13 - 251
Target Start/End: Original strand, 5519978 - 5520218
Alignment:
| Q |
13 |
aatatcttacaaaaatcaatacattacaaaaacatatcaatttcattcataactcccgaactcatatacattatggttgaggaggaatctctcgggagtt |
112 |
Q |
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| T |
5519978 |
aatatcttacaaaaatcaatacattacagaaacatatcaatttcattcataactcccgaactcatatacattatggttgaggaggaatctctcgggggtt |
5520077 |
T |
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| Q |
113 |
atatttaatt--aaaaaatgagcataaatgaaatgtaaatgaaccttttaagatttaccgtctatttgatcataaaagagtgaggattgactatagttca |
210 |
Q |
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| T |
5520078 |
atatttaattaaaaaaaatgagcataaacgaaatgtaaatgaaccttctaagctttaccgtctatttaatcacaaaagagtgacgattgactatagttca |
5520177 |
T |
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| Q |
211 |
tggaaggattgtgatgaaaaaccctaaatcgcacaaaaatt |
251 |
Q |
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| T |
5520178 |
tggaaggattgtgatgaaaaaccctaaatcgcacaaaaatt |
5520218 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 37791451 - 37791391
Alignment:
| Q |
136 |
aaatgaaatgtaaatgaaccttttaagatttaccgtctatttgatcataaaagagtgagga |
196 |
Q |
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| T |
37791451 |
aaatgaaatgtaaatgatccttctaatctttaccttcgatttgatcacaaaaaagtgagga |
37791391 |
T |
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