View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17104_high_24 (Length: 248)
Name: NF17104_high_24
Description: NF17104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17104_high_24 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 2 - 248
Target Start/End: Complemental strand, 45066686 - 45066440
Alignment:
| Q |
2 |
aagttaacaactccaatgagtatcatgtcacaggccaatataacgcgcacaaatcatataatgtggacaatggggacagatttcaagtaccaatatgcac |
101 |
Q |
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| T |
45066686 |
aagttaacaactccaatgagtatactgtcacaggccaatataacgcgcacaaatcatataatgtggacaatggggacagatttcaagtaccaatatgcac |
45066587 |
T |
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| Q |
102 |
atacctggtataggcaattggacaagtttattcactatgttaaccaggttgcttatcttcaactctttgcttaataaaaaagtttaaaatttaagtttat |
201 |
Q |
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| T |
45066586 |
atacctggtataggcaattggacaagtttattcactatgttaaccaggttgcttatcttcaactctttgcttaataaaaaagtttaaaatttaagtttat |
45066487 |
T |
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| Q |
202 |
ttcgccaagcgtcctttgacatactaatggtccggctcactaatgct |
248 |
Q |
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| T |
45066486 |
ttcgccaagcgtcctttgacatactaatggtccggctcactaatgct |
45066440 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 32384399 - 32384320
Alignment:
| Q |
32 |
caggccaatataacgcgcacaaatcatataatgtggacaatggggacagatttcaagtaccaatatgcacatacctggta |
111 |
Q |
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| T |
32384399 |
caggcaaacataactcggacaaatcacattatgtggacaatgggaactgattttaagtatcaatacgcacatacatggta |
32384320 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 150
Target Start/End: Complemental strand, 32398990 - 32398893
Alignment:
| Q |
53 |
aatcatataatgtggacaatggggacagatttcaagtaccaatatgcacatacctggtataggcaattggacaagtttattcactatgttaaccaggt |
150 |
Q |
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| T |
32398990 |
aatcacataatgtgggcaatggggacagacttccgctatcaatatgctaattcatggtttaggcagatggataagtttattcactatgtcaatcaggt |
32398893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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