View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17104_high_5 (Length: 466)

Name: NF17104_high_5
Description: NF17104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17104_high_5
NF17104_high_5
[»] chr1 (27 HSPs)
chr1 (1-449)||(52819644-52820092)
chr1 (129-449)||(11881207-11881527)
chr1 (129-449)||(11890573-11890893)
chr1 (185-449)||(11903707-11903971)
chr1 (1-64)||(52819320-52819383)
chr1 (1-64)||(52819524-52819587)
chr1 (128-201)||(11904708-11904781)
chr1 (129-201)||(11891085-11891157)
chr1 (39-119)||(11904754-11904834)
chr1 (42-115)||(11881901-11881974)
chr1 (42-115)||(11891135-11891208)
chr1 (129-201)||(11881719-11881791)
chr1 (129-201)||(11881851-11881923)
chr1 (128-201)||(11904048-11904121)
chr1 (42-115)||(52819157-52819230)
chr1 (129-201)||(11881587-11881659)
chr1 (1-64)||(52819440-52819503)
chr1 (132-201)||(11890953-11891022)
chr1 (93-190)||(52819364-52819461)
chr1 (117-190)||(52819592-52819665)
chr1 (129-201)||(11904180-11904252)
chr1 (129-201)||(11904312-11904384)
chr1 (129-201)||(11904444-11904516)
chr1 (129-201)||(11904576-11904648)
chr1 (117-187)||(52819268-52819338)
chr1 (54-106)||(11890880-11890932)
chr1 (54-106)||(11903975-11904027)
[»] chr4 (1 HSPs)
chr4 (38-78)||(24420819-24420859)


Alignment Details
Target: chr1 (Bit Score: 433; Significance: 0; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 52819644 - 52820092
Alignment:
Q  1 gaggaggtgacttgtagtagtatgggggtttgtaaacaggtgatggtgggggtggtgacttgtaataatatggaggagaatattgatggacaggtggagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52819644 gaggaggtgacttgtagtagtatgggggtttgtaaacaggtgatggtgggggtggtgacttgtaataatatggaggagaatattgatggacaggtggagg 52819743  T
Q  101 tggtgatgtgtacttataagtaggtgatggtggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgatttgtagtagtaaggagttggt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  52819744 tggtgatgtgtacttataagtaggtgatggtggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgacttgtagtagtaaggagttggt 52819843  T
Q  201 gaaggcttaggtttttcacattcttcataatgcttcttagaagcatacgcgaatggcttagccttgagcacaacttcatacttgtctttagattttacct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52819844 gaaggcttaggtttttcacattcttcataatgcttcttagaagcatatgcgaatggcttagccttgagcacaacttcatacttgtctttagattttacct 52819943  T
Q  301 tcaagtcagttccctcattgagcttagtaggtacgttgaagggagagtctttaggtggagcatatagtttggctttgcacaccacagaaccatattttac 400  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52819944 tcaagtcagttccctcattgagcttagtaggtatgttgaagggagagtctttaggtggagcatatagtttggctttgcacaccacagaaccatattttac 52820043  T
Q  401 atagttaaagtttggaattgtgatggtatactttccattactcttagtt 449  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  52820044 atagttaaagtttggaattgtgatggcatactttccattactcttagtt 52820092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 129 - 449
Target Start/End: Complemental strand, 11881527 - 11881207
Alignment:
Q  129 ggtggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgatttgtagtagtaaggagttggtgaaggcttaggtttttcacattcttcat 228  Q
    |||||||||||||| |||||| | ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||       
T  11881527 ggtggaggtggtgagttgtatttgtaaactggtgagggaggtggaggtgatttgtagtagtaaggagttggtgaaggcttaggcttctcacattctttga 11881428  T
Q  229 aatgcttcttagaagcatacgcgaatggcttagccttgagcacaacttcatacttgtctttagattttaccttcaagtcagttccctcattgagcttagt 328  Q
    |||| ||||| |||||||| || ||||||||||||||||||||||| || ||||||||||| ||||| |  | ||| |  ||||| | ||| ||||| ||    
T  11881427 aatgtttctttgaagcataagcaaatggcttagccttgagcacaacctcgtacttgtctttggatttcaagtacaactttgttccttgatttagctttgt 11881328  T
Q  329 aggtacgttgaagggagagtctttaggtggagcatatagtttggctttgcacaccacagaaccatattttacatagttaaagtttggaattgtgatggta 428  Q
    ||||| ||||||||| ||  | |||||||||||||||||    || ||||||||    ||||||||||| ||||||| |||||    || |||||||| |    
T  11881327 aggtatgttgaagggtgaacccttaggtggagcatatagggcagccttgcacactgtcgaaccatatttgacatagtcaaagtccttaactgtgatggca 11881228  T
Q  429 tactttccattactcttagtt 449  Q
    |||||||||||  ||||||||    
T  11881227 tactttccattgttcttagtt 11881207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 129 - 449
Target Start/End: Complemental strand, 11890893 - 11890573
Alignment:
Q  129 ggtggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgatttgtagtagtaaggagttggtgaaggcttaggtttttcacattcttcat 228  Q
    |||||||||||||| || ||  | ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |  || ||||||||||       
T  11890893 ggtggaggtggtgagttatacttgtaaactggtgagggaggtggaggtgatttgtagtagtaaggagttggtgaaggcttggacttctcacattctttga 11890794  T
Q  229 aatgcttcttagaagcatacgcgaatggcttagccttgagcacaacttcatacttgtctttagattttaccttcaagtcagttccctcattgagcttagt 328  Q
    |||| ||||| |||||||| || ||||||||||||||||||||||| || ||||||||||| ||||| |  | |||||  ||||| |  || ||||| ||    
T  11890793 aatgtttctttgaagcataagcaaatggcttagccttgagcacaacctcgtacttgtctttggatttcaagtacaagtttgttccttggtttagctttgt 11890694  T
Q  329 aggtacgttgaagggagagtctttaggtggagcatatagtttggctttgcacaccacagaaccatattttacatagttaaagtttggaattgtgatggta 428  Q
    ||||| ||||||||| ||  | |||||||||||||| ||    || ||||||||    ||||||||||| ||||||| |||||    || |||||||| |    
T  11890693 aggtatgttgaagggtgaacccttaggtggagcataaagggcagccttgcacactgttgaaccatatttgacatagtcaaagtccttaactgtgatggca 11890594  T
Q  429 tactttccattactcttagtt 449  Q
    |||||||||||  ||||||||    
T  11890593 tactttccattgatcttagtt 11890573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 185 - 449
Target Start/End: Complemental strand, 11903971 - 11903707
Alignment:
Q  185 gtagtaaggagttggtgaaggcttaggtttttcacattcttcataatgcttcttagaagcatacgcgaatggcttagccttgagcacaacttcatacttg 284  Q
    |||| |||||||||||||||||||||| || ||||||||||   |||| ||||| |||||||| || ||||||||||||||||||||||| || ||||||    
T  11903971 gtagaaaggagttggtgaaggcttaggcttctcacattctttgaaatgtttctttgaagcataagcaaatggcttagccttgagcacaacctcgtacttg 11903872  T
Q  285 tctttagattttaccttcaagtcagttccctcattgagcttagtaggtacgttgaagggagagtctttaggtggagcatatagtttggctttgcacacca 384  Q
    ||||| ||||| |  | ||| |  ||||| | ||| ||||| ||||||| ||||||||| ||  | |||||||||||||| ||  | || ||||||||      
T  11903871 tctttggatttcaagtacaactttgttccttgatttagctttgtaggtatgttgaagggtgaacccttaggtggagcataaagggtagccttgcacactg 11903772  T
Q  385 cagaaccatattttacatagttaaagtttggaattgtgatggtatactttccattactcttagtt 449  Q
      ||||||||||| ||||||| |||||    || |||||||| ||||||||||||  ||||||||    
T  11903771 tcgaaccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgttcttagtt 11903707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 52819320 - 52819383
Alignment:
Q  1 gaggaggtgacttgtagtagtatgggggtttgtaaacaggtgatggtgggggtggtgacttgta 64  Q
    ||||||||||||||||||| || || |||||||| |||||||||||||||||||||||||||||    
T  52819320 gaggaggtgacttgtagtaatagggtggtttgtatacaggtgatggtgggggtggtgacttgta 52819383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 52819524 - 52819587
Alignment:
Q  1 gaggaggtgacttgtagtagtatgggggtttgtaaacaggtgatggtgggggtggtgacttgta 64  Q
    |||||||||||||||| |||||||||||||| || |||||||||||||||||||| ||||||||    
T  52819524 gaggaggtgacttgtaatagtatgggggtttatacacaggtgatggtgggggtggagacttgta 52819587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 11904781 - 11904708
Alignment:
Q  128 tggtggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgatttgtagtagtaaggagttggtg 201  Q
    ||||||||| ||||| |||||  |||||||||||| |||||| |||||||||||||||||||| ||||||||||    
T  11904781 tggtggaggaggtgagttgtacttataaaccggtgcaggaggtggaggtgatttgtagtagtatggagttggtg 11904708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 11891157 - 11891085
Alignment:
Q  129 ggtggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgatttgtagtagtaaggagttggtg 201  Q
    |||||||||||||| |||||  | ||||||||||  ||||| |||||||||||||||||||||||||||||||    
T  11891157 ggtggaggtggtgagttgtacttgtaaaccggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 11891085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 11904834 - 11904754
Alignment:
Q  39 ggtgatggtgggggtggtgacttgtaataatatggaggagaatattgatggacaggtggaggtggtgatgtgtacttataa 119  Q
    ||||||||||||||||||||||| || || |||||||||||||| | |||||| |||||||| |||||  |||||||||||    
T  11904834 ggtgatggtgggggtggtgacttatagtagtatggaggagaataataatggactggtggaggaggtgagttgtacttataa 11904754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 42 - 115
Target Start/End: Complemental strand, 11881974 - 11881901
Alignment:
Q  42 gatggtgggggtggtgacttgtaataatatggaggagaatattgatggacaggtggaggtggtgatgtgtactt 115  Q
    ||||||||||||||||||||||| || ||||| |||||||| | |||||| ||||||||||||||  |||||||    
T  11881974 gatggtgggggtggtgacttgtagtagtatggtggagaataataatggaccggtggaggtggtgagttgtactt 11881901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 42 - 115
Target Start/End: Complemental strand, 11891208 - 11891135
Alignment:
Q  42 gatggtgggggtggtgacttgtaataatatggaggagaatattgatggacaggtggaggtggtgatgtgtactt 115  Q
    ||||||||||||||||||||||| || ||||| |||||||| | |||||| ||||||||||||||  |||||||    
T  11891208 gatggtgggggtggtgacttgtagtagtatggtggagaataataatggaccggtggaggtggtgagttgtactt 11891135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 11881791 - 11881719
Alignment:
Q  129 ggtggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgatttgtagtagtaaggagttggtg 201  Q
    ||||||||||| || |||||  | ||||||||||  ||||| |||||||||||||||||||||||||||||||    
T  11881791 ggtggaggtggggagttgtacttgtaaaccggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 11881719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 11881923 - 11881851
Alignment:
Q  129 ggtggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgatttgtagtagtaaggagttggtg 201  Q
    |||||||||||||| |||||  | ||||||||||  || || |||||||||||||||||||||||||||||||    
T  11881923 ggtggaggtggtgagttgtacttgtaaaccggtgcgggtggtggaggtgatttgtagtagtaaggagttggtg 11881851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 11904121 - 11904048
Alignment:
Q  128 tggtggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgatttgtagtagtaaggagttggtg 201  Q
    |||||||||||| || |||||  | ||||||||||  || || |||||||||||||||||||||||||||||||    
T  11904121 tggtggaggtggggagttgtacttgtaaaccggtgcgggtggtggaggtgatttgtagtagtaaggagttggtg 11904048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 115
Target Start/End: Original strand, 52819157 - 52819230
Alignment:
Q  42 gatggtgggggtggtgacttgtaataatatggaggagaatattgatggacaggtggaggtggtgatgtgtactt 115  Q
    |||||||| ||||||||||| || || ||||| |||||||| | |||||||||||||||||||||  |||||||    
T  52819157 gatggtggaggtggtgacttatagtagtatggtggagaataataatggacaggtggaggtggtgacttgtactt 52819230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 11881659 - 11881587
Alignment:
Q  129 ggtggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgatttgtagtagtaaggagttggtg 201  Q
    |||||||| ||||| |||||  | ||||||||||  || || |||||||||||||||||||||||||||||||    
T  11881659 ggtggagggggtgagttgtacttgtaaaccggtgcgggtggtggaggtgatttgtagtagtaaggagttggtg 11881587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 52819440 - 52819503
Alignment:
Q  1 gaggaggtgacttgtagtagtatgggggtttgtaaacaggtgatggtgggggtggtgacttgta 64  Q
    |||| ||||| ||||||||||| ||||||||||| |||||||| ||||| ||||| ||||||||    
T  52819440 gaggtggtgaattgtagtagtacgggggtttgtacacaggtgaaggtggaggtggagacttgta 52819503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 11891022 - 11890953
Alignment:
Q  132 ggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgatttgtagtagtaaggagttggtg 201  Q
    |||||||| || |||||  | ||||| ||||  ||||| |||||||||||||||||||||||||||||||    
T  11891022 ggaggtggggagttgtacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 11890953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 93 - 190
Target Start/End: Original strand, 52819364 - 52819461
Alignment:
Q  93 ggtggaggtggtgatgtgtacttataagtaggtgatggtggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgatttgtagtagta 190  Q
    ||||| ||||||||  |||||  ||| || ||||| |||||||||||||| |||||| | ||||| ||||  |||||||| ||||| |||||||||||    
T  52819364 ggtgggggtggtgacttgtacacatatgttggtgacggtggaggtggtgaattgtatttgtaaactggtgttggaggaggtggtgaattgtagtagta 52819461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 52819592 - 52819665
Alignment:
Q  117 taagtaggtgatggtggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgatttgtagtagta 190  Q
    ||||| |||||||||||||||||||| |||||  | ||||  ||||  |||||||||||||| |||||||||||    
T  52819592 taagttggtgatggtggaggtggtgaattgtacttgtaaattggtgttggaggaggaggtgacttgtagtagta 52819665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 11904252 - 11904180
Alignment:
Q  129 ggtggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgatttgtagtagtaaggagttggtg 201  Q
    ||||||||||| || |||||  | ||||||||||  || || ||||||||||| |||||||||||||||||||    
T  11904252 ggtggaggtggggagttgtacttgtaaaccggtgcgggtggtggaggtgatttatagtagtaaggagttggtg 11904180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 11904384 - 11904312
Alignment:
Q  129 ggtggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgatttgtagtagtaaggagttggtg 201  Q
    ||||||||||| || |||||  | ||||||||||  || || ||||||||||| |||||||||||||||||||    
T  11904384 ggtggaggtggggagttgtacttgtaaaccggtgcgggtggtggaggtgatttatagtagtaaggagttggtg 11904312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 11904516 - 11904444
Alignment:
Q  129 ggtggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgatttgtagtagtaaggagttggtg 201  Q
    ||||||||||| || |||||  | ||||||||||  || || ||||||||||| |||||||||||||||||||    
T  11904516 ggtggaggtggggagttgtacttgtaaaccggtgcgggtggtggaggtgatttatagtagtaaggagttggtg 11904444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 11904648 - 11904576
Alignment:
Q  129 ggtggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgatttgtagtagtaaggagttggtg 201  Q
    ||||||||||| || |||||  | ||||||||||  || || ||||||||||| |||||||||||||||||||    
T  11904648 ggtggaggtggggagttgtacttgtaaaccggtgcgggtggtggaggtgatttatagtagtaaggagttggtg 11904576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 187
Target Start/End: Original strand, 52819268 - 52819338
Alignment:
Q  117 taagtaggtgatggtggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgatttgtagta 187  Q
    |||| ||||||||| ||||||||||| |||||  | ||||| ||||  |||||||||||||| ||||||||    
T  52819268 taagcaggtgatggcggaggtggtgaattgtacttgtaaactggtgttggaggaggaggtgacttgtagta 52819338  T

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Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 11890932 - 11890880
Alignment:
Q  54 ggtgacttgtaataatatggaggagaatattgatggacaggtggaggtggtga 106  Q
    ||||||||||| ||||||||||| || || | |||||| ||||||||||||||    
T  11890932 ggtgacttgtagtaatatggaggtgagtaataatggacgggtggaggtggtga 11890880  T

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Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 11904027 - 11903975
Alignment:
Q  54 ggtgacttgtaataatatggaggagaatattgatggacaggtggaggtggtga 106  Q
    ||||||||||| ||||||||||| || || | |||||| ||||||||||||||    
T  11904027 ggtgacttgtagtaatatggaggtgagtaataatggacgggtggaggtggtga 11903975  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 24420819 - 24420859
Alignment:
Q  38 aggtgatggtgggggtggtgacttgtaataatatggaggag 78  Q
    |||||||||||||||||| |||||||||  |||||||||||    
T  24420819 aggtgatggtgggggtggggacttgtaaacatatggaggag 24420859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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