View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17104_high_7 (Length: 369)
Name: NF17104_high_7
Description: NF17104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17104_high_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 12 - 352
Target Start/End: Complemental strand, 42964334 - 42963992
Alignment:
| Q |
12 |
tatactagagcaagttcaaggtataattaagctttaaactagtagatgatatcttgatatataccatcactcttactattaaannnnnnnaattagtcac |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
42964334 |
tatactagagcaagttcaaggtataattaagctttaaactagtagatgatatcatgatatataccatcactcttactattaaaaaattttaattagtcac |
42964235 |
T |
|
| Q |
112 |
taaaattttgaaagaaaaaatatgaaattttctttaactgcatcactaaatttaactcaaggggtgaatttttagccaataaactacttnnnnnnnnttg |
211 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
42964234 |
taaaatttagaaagaaaaaatatgaaattttctttaactgcatcactaaatttaactcaagggatgaatttttagccaataaactacttaaaaaaaattg |
42964135 |
T |
|
| Q |
212 |
atctaaattgaaaacatgtcttattataaa--tgtgtgtctcctttcaaccatcaaggatcgagcactgacattttttaatcttatgcgtgcttatttgc |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42964134 |
atctaaattgaaaacatgtcttattataaatgtgtgtgtctcctttcaaccatcaaggatcgagcactgacattttttaatcttatgcgtgcttatttgc |
42964035 |
T |
|
| Q |
310 |
ggacatcattttactcaaaatctcaaatagatattgtcgtaaa |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42964034 |
ggacatcattttactcaaaatctcaaatagatattgtcgtaaa |
42963992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 165
Target Start/End: Original strand, 35607168 - 35607220
Alignment:
| Q |
113 |
aaaattttgaaagaaaaaatatgaaattttctttaactgcatcactaaattta |
165 |
Q |
| |
|
||||||| ||||||||| |||||||||||||| ||| ||||||| |||||||| |
|
|
| T |
35607168 |
aaaatttagaaagaaaacatatgaaattttctctaattgcatcaataaattta |
35607220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University