View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17104_low_11 (Length: 344)
Name: NF17104_low_11
Description: NF17104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17104_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 106 - 277
Target Start/End: Complemental strand, 39526016 - 39525846
Alignment:
| Q |
106 |
cgtcacctgtccaaaccgataaccgagtacatgaacgaacgagattgggccttgattgtgcaaccgtgggtttgatcggattggcagttctggtccaccc |
205 |
Q |
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| T |
39526016 |
cgtcacccgtccaaaccgataaccaagtacatgaacgaacgggattgg-ccttgattgtgcaaccgtgggtttgatcggattggcagttctggttcaccg |
39525918 |
T |
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| Q |
206 |
ccgactgaaaccgaccgtttatccacccctaaaagaagggaacacaaagaaagggttggaaggaaccaactt |
277 |
Q |
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| T |
39525917 |
tcgaccgaaaccgaccgtttatccacccctaaaagaagggaacacaaagaaagggttggaaggaaccgactt |
39525846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 274 - 343
Target Start/End: Complemental strand, 39525811 - 39525742
Alignment:
| Q |
274 |
acttcagacgaatcatcacaaacatcgatcctccaaaactcccgtaaacaaccattctcctagcttttca |
343 |
Q |
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| T |
39525811 |
acttcagacaaatcatcacaaacatcaatcctccaaaactcccgtaaacaaccattctcctagcttttca |
39525742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 41415537 - 41415604
Alignment:
| Q |
166 |
caaccgtgggtttgatcggattggcagttctggtccacccccgactgaaaccgaccgtttatccaccc |
233 |
Q |
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| T |
41415537 |
caaccgtgggtttgaacggattggcattttcggtccgtcaccgaccgaaaccgaccgtttgtccaccc |
41415604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 238 - 272
Target Start/End: Complemental strand, 41215865 - 41215831
Alignment:
| Q |
238 |
aagaagggaacacaaagaaagggttggaaggaacc |
272 |
Q |
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| T |
41215865 |
aagaagggaacacaaagaaagggttggaaggaacc |
41215831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 284 - 332
Target Start/End: Complemental strand, 41215762 - 41215713
Alignment:
| Q |
284 |
aatcatcacaaacatcga-tcctccaaaactcccgtaaacaaccattctc |
332 |
Q |
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| T |
41215762 |
aatcatcacaaacatcaaatcctccaaaactcccgtaagcaaccattctc |
41215713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 236
Target Start/End: Complemental strand, 4475808 - 4475738
Alignment:
| Q |
166 |
caaccgtgggtttgatcggattggcagttctggtccacccccgactgaaaccgaccgtttatccaccccta |
236 |
Q |
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| T |
4475808 |
caaccgtgggtttgaacggattggcattttcggtccgtcgccgaccgaaaccgaccgtttgtccaccccta |
4475738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 166 - 236
Target Start/End: Original strand, 42740929 - 42740999
Alignment:
| Q |
166 |
caaccgtgggtttgatcggattggcagttctggtccacccccgactgaaaccgaccgtttatccaccccta |
236 |
Q |
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| T |
42740929 |
caaccgtgggtttgaacggattggcattttcggtccgttgccgaccgaaaccgaccgtttgtccaccccta |
42740999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 236
Target Start/End: Original strand, 42970595 - 42970665
Alignment:
| Q |
166 |
caaccgtgggtttgatcggattggcagttctggtccacccccgactgaaaccgaccgtttatccaccccta |
236 |
Q |
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| T |
42970595 |
caaccgtgggtttgaacggattggcattttcggtccgtcgccgaccgaaaccgaccgtttgtccaccccta |
42970665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 237
Target Start/End: Original strand, 33694437 - 33694508
Alignment:
| Q |
166 |
caaccgtgggtttgatcggattggcagttctggtccacccccgactgaaaccgaccgtttatccacccctaa |
237 |
Q |
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| T |
33694437 |
caaccgtgggtttgaacggattggcattttcggtccgttgccgaccgaaaccgaccgtttgtccacccctaa |
33694508 |
T |
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