View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17104_low_12 (Length: 341)
Name: NF17104_low_12
Description: NF17104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17104_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 2 - 325
Target Start/End: Original strand, 8902178 - 8902502
Alignment:
| Q |
2 |
gtgggtagattat-acttagtcacggtcatgtataaatattatatgtgattatgattacattaagaagtgaatttaacgcaaagatgaagaaaattagtc |
100 |
Q |
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| T |
8902178 |
gtgggtaaattatgacttagtcacggtcatgtataaatattatatgtgattatgattacattaagaagtgaatttaacgcaaagatgaagaaaattagtc |
8902277 |
T |
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| Q |
101 |
atggtcatatacattatatttggatgatgtcatatatcacggtaagaaaattataattataattattttgtttggcatgatggacctaaagtttgaaaca |
200 |
Q |
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| T |
8902278 |
atggtcatatacattatatttggatgatgtcatatatcacggtaagaaaattataattataattattttgtttggcatgatggacctaaagtttgaaaca |
8902377 |
T |
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| Q |
201 |
catgaattggaactcattatttttccatttgtttttaacctttttatggtcataaaagattacagacctgcaccttagtgcaaagtagaaagaaacaaat |
300 |
Q |
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| T |
8902378 |
catgaattggaactcattatttttccatttgtttttaacctttttatggtcataaaagattacagacctgcaccttagtgcaaagtagaaagaaacaaat |
8902477 |
T |
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| Q |
301 |
gtcgagaaataaagatagaaaatgt |
325 |
Q |
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| T |
8902478 |
gtagagaaataaagatagaaaatgt |
8902502 |
T |
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