View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17104_low_13 (Length: 332)

Name: NF17104_low_13
Description: NF17104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17104_low_13
NF17104_low_13
[»] chr7 (12 HSPs)
chr7 (35-192)||(26942262-26942407)
chr7 (33-192)||(15234818-15234977)
chr7 (33-97)||(1076070-1076134)
chr7 (270-313)||(26942488-26942531)
chr7 (33-107)||(44945010-44945083)
chr7 (33-103)||(44970077-44970147)
chr7 (27-96)||(43080176-43080245)
chr7 (33-145)||(17756577-17756687)
chr7 (33-96)||(21809300-21809362)
chr7 (33-70)||(23328648-23328685)
chr7 (33-97)||(36723900-36723965)
chr7 (33-70)||(49017060-49017097)
[»] chr5 (7 HSPs)
chr5 (33-192)||(17549156-17549315)
chr5 (36-158)||(31736839-31736960)
chr5 (33-97)||(4428885-4428949)
chr5 (33-105)||(14028293-14028365)
chr5 (34-105)||(37101815-37101886)
chr5 (191-252)||(4428702-4428763)
chr5 (33-77)||(33061835-33061879)
[»] chr3 (8 HSPs)
chr3 (36-192)||(38233075-38233229)
chr3 (26-192)||(43410114-43410280)
chr3 (33-97)||(42641926-42641990)
chr3 (35-106)||(25644585-25644656)
chr3 (33-70)||(8541103-8541140)
chr3 (191-252)||(25644851-25644912)
chr3 (33-70)||(27813518-27813555)
chr3 (33-70)||(47278365-47278402)
[»] chr6 (3 HSPs)
chr6 (33-97)||(3418996-3419060)
chr6 (33-96)||(29968709-29968772)
chr6 (191-252)||(34884330-34884391)
[»] chr4 (5 HSPs)
chr4 (33-147)||(9457179-9457292)
chr4 (33-96)||(8823595-8823658)
chr4 (33-106)||(16204746-16204819)
chr4 (33-97)||(45071011-45071073)
chr4 (33-69)||(49084046-49084082)
[»] scaffold0001 (1 HSPs)
scaffold0001 (33-106)||(181487-181560)
[»] chr2 (1 HSPs)
chr2 (33-96)||(13284269-13284332)
[»] chr1 (5 HSPs)
chr1 (33-97)||(4198208-4198271)
chr1 (33-97)||(36565777-36565841)
chr1 (60-107)||(1787352-1787399)
chr1 (191-252)||(4198475-4198536)
chr1 (33-70)||(43671451-43671488)
[»] scaffold0097 (1 HSPs)
scaffold0097 (33-96)||(47588-47651)
[»] scaffold0648 (1 HSPs)
scaffold0648 (33-70)||(4607-4644)
[»] scaffold0274 (1 HSPs)
scaffold0274 (33-70)||(4077-4114)


Alignment Details
Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 35 - 192
Target Start/End: Original strand, 26942262 - 26942407
Alignment:
Q  35 gatctctttggagacccccaggcgccactgcaccccacagtttgcatataaatttcatattatacatgatattataactgatacgttgtcgttgcagtgg 134  Q
    |||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||            ||||||||||||||||||| ||||||||    
T  26942262 gatctctttggagacccccaggtgccactgcacctcccagtttgcatataaatttcatat------------tataactgatacgttgtcgctgcagtgg 26942349  T
Q  135 tcatgcggtccctaaatgtattaatggttgcgtgttcgaaccccgacaccctcctttt 192  Q
    |||||||||||||||||||||||||||||||| ||| |||||| | ||||||||||||    
T  26942350 tcatgcggtccctaaatgtattaatggttgcgcgtttgaaccctggcaccctcctttt 26942407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 33 - 192
Target Start/End: Complemental strand, 15234977 - 15234818
Alignment:
Q  33 cggatctctttggagacccccaggcgccactgcaccccacagtttgcatataaatttcatattatacatgatattataactgatacgttgtcgttgcagt 132  Q
    |||||||||||||||||||||||| ||| |||||||||  |||||  ||||||||||||||||||||||||||||  |||||||||||||||| |||||     
T  15234977 cggatctctttggagacccccaggtgcctctgcacccccaagtttttatataaatttcatattatacatgatatttcaactgatacgttgtcgctgcagc 15234878  T
Q  133 ggtcatgcggtccctaaatgtattaatggttgcgtgttcgaaccccgacaccctcctttt 192  Q
    |||||||| ||| || |||||| ||  ||||||   ||||||||| | ||||||||||||    
T  15234877 ggtcatgcagtctctcaatgtaatataggttgcacattcgaaccctggcaccctcctttt 15234818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 1076134 - 1076070
Alignment:
Q  33 cggatctctttggagacccccaggcgccactgcaccccacagtttgcatataaatttcatattat 97  Q
    |||||||||||||||||||||||  ||||||||||||| ||||||  ||||||||||||||||||    
T  1076134 cggatctctttggagacccccagatgccactgcaccccccagtttttatataaatttcatattat 1076070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 270 - 313
Target Start/End: Original strand, 26942488 - 26942531
Alignment:
Q  270 aagatccgccactgatccctagaccctaaaaatagggttgcagg 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  26942488 aagatccgccactgatccctagaccctaaaaatagggttgcagg 26942531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 44945010 - 44945083
Alignment:
Q  33 cggatctctttggagacccccaggcgccactgcaccccacagtttgcatataaatttcatattatacatgatatt 107  Q
    |||||||||||||||||||||||| |||||| |||||| ||||||  |||||||||||||||||| | |||||||    
T  44945010 cggatctctttggagacccccaggtgccactccacccc-cagtttttatataaatttcatattatgcttgatatt 44945083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 103
Target Start/End: Original strand, 44970077 - 44970147
Alignment:
Q  33 cggatctctttggagacccccaggcgccactgcaccccacagtttgcatataaatttcatattatacatga 103  Q
    ||||||||||  ||||| |||||| ||||||||||||| ||||||  |||||||||||||||||| |||||    
T  44970077 cggatctcttcagagactcccaggtgccactgcaccccccagtttatatataaatttcatattatgcatga 44970147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 27 - 96
Target Start/End: Complemental strand, 43080245 - 43080176
Alignment:
Q  27 cagagtcggatctctttggagacccccaggcgccactgcaccccacagtttgcatataaatttcatatta 96  Q
    ||||| ||||||||||||||||||| |||| | ||||||||||| ||||||| ||||| || ||||||||    
T  43080245 cagaggcggatctctttggagaccctcaggtgtcactgcaccccccagtttggatatagatatcatatta 43080176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 145
Target Start/End: Original strand, 17756577 - 17756687
Alignment:
Q  33 cggatctctttggagacccccaggcgccactgcaccccacagtttgcatataaatttcatattatacatgatattataactgatacgttgtcgttgcagt 132  Q
    ||||||||||||||||| || ||| ||||||||||| | || |||  |||||||||||||||||| | ||||||| ||||  || || ||| |||| |||    
T  17756577 cggatctctttggagactccaaggtgccactgcacctc-caatttttatataaatttcatattatgcttgatattttaacaaatgcg-tgttgttgtagt 17756674  T
Q  133 ggtcatgcggtcc 145  Q
    ||| |||||||||    
T  17756675 ggttatgcggtcc 17756687  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 96
Target Start/End: Complemental strand, 21809362 - 21809300
Alignment:
Q  33 cggatctctttggagacccccaggcgccactgcaccccacagtttgcatataaatttcatatta 96  Q
    |||||||||||||||| || |||| ||||||||||||| ||||||  |||||||| ||||||||    
T  21809362 cggatctctttggagatcctcaggtgccactgcacccc-cagttttgatataaatatcatatta 21809300  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 23328648 - 23328685
Alignment:
Q  33 cggatctctttggagacccccaggcgccactgcacccc 70  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  23328648 cggatctctttagagacccccaggtgccactgcacccc 23328685  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 36723900 - 36723965
Alignment:
Q  33 cggatctctttggagacccccaggcgccac-tgcaccccacagtttgcatataaatttcatattat 97  Q
    |||||||||||||||||||||||  ||||| | | |||| ||||||  ||||||||||||||||||    
T  36723900 cggatctctttggagacccccagatgccacttcccccccccagtttttatataaatttcatattat 36723965  T

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Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 49017097 - 49017060
Alignment:
Q  33 cggatctctttggagacccccaggcgccactgcacccc 70  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  49017097 cggatctctttagagacccccaggtgccactgcacccc 49017060  T

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Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 33 - 192
Target Start/End: Original strand, 17549156 - 17549315
Alignment:
Q  33 cggatctctttggagacccccaggcgccactgcaccccacagtttgcatataaatttcatattatacatgatattataactgatacgttgtcgttgcagt 132  Q
    |||||||||||||||||||||||| ||| |||||||||  |||||  ||||||||||||||||||||||||||||  |||||||||||||||| |||||     
T  17549156 cggatctctttggagacccccaggtgcctctgcacccccaagtttttatataaatttcatattatacatgatatttcaactgatacgttgtcgctgcagc 17549255  T
Q  133 ggtcatgcggtccctaaatgtattaatggttgcgtgttcgaaccccgacaccctcctttt 192  Q
    |||||||| ||| || |||||| ||  ||||||   ||||||||| | ||||||||||||    
T  17549256 ggtcatgcagtctctcaatgtaatataggttgcacattcgaaccctggcaccctcctttt 17549315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 36 - 158
Target Start/End: Complemental strand, 31736960 - 31736839
Alignment:
Q  36 atctctttggagacccccaggcgccactgcaccccacagtttgcatataaatttcatattatacatgatattataactgatacgttgtcgttgcagtggt 135  Q
    ||||||||||||||||||||| ||||||||||||| ||||||  ||||||||||||||||||   || ||||  |||  ||  |||||||||| ||||||    
T  31736960 atctctttggagacccccaggtgccactgcacccc-cagtttttatataaatttcatattatgattggtatttcaacaaatgtgttgtcgttgaagtggt 31736862  T
Q  136 catgcggtccctaaatgtattaa 158  Q
     |||| |||||| ||||||||||    
T  31736861 tatgcagtccctcaatgtattaa 31736839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 4428949 - 4428885
Alignment:
Q  33 cggatctctttggagacccccaggcgccactgcaccccacagtttgcatataaatttcatattat 97  Q
    |||||||||||||||||||| ||| ||||||||||||| ||| ||  ||||||||||||||||||    
T  4428949 cggatctctttggagacccctaggtgccactgcaccccccagattttatataaatttcatattat 4428885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 14028365 - 14028293
Alignment:
Q  33 cggatctctttggagacccccaggcgccactgcaccccacagtttgcatataaatttcatattatacatgata 105  Q
    |||||||||||||||||||||||| || |||||||||| ||||||  |||||||| ||||||||  |||||||    
T  14028365 cggatctctttggagacccccaggtgcaactgcaccccccagttttaatataaatatcatattaggcatgata 14028293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 105
Target Start/End: Complemental strand, 37101886 - 37101815
Alignment:
Q  34 ggatctctttggagacccccaggcgccactgcaccccacagtttgcatataaatttcatattatacatgata 105  Q
    |||||||||||||||||  |||| |||||||||||||  | |||  ||||||||||||||||||||||||||    
T  37101886 ggatctctttggagacctgcaggtgccactgcaccccctaatttttatataaatttcatattatacatgata 37101815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 252
Target Start/End: Complemental strand, 4428763 - 4428702
Alignment:
Q  191 ttaacaatattgcacaaattttaaaattgtttaatatgtattatgcaaatatttggcacccc 252  Q
    |||||||||||| | |  |||||||| |||||||||| |||| | |||||||||||||||||    
T  4428763 ttaacaatattgaatattttttaaaactgtttaatatatattcttcaaatatttggcacccc 4428702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 77
Target Start/End: Original strand, 33061835 - 33061879
Alignment:
Q  33 cggatctctttggagacccccaggcgccactgcaccccacagttt 77  Q
    ||||||||| |||||||||| ||| ||||||||||||| ||||||    
T  33061835 cggatctctgtggagacccctaggtgccactgcaccccccagttt 33061879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 36 - 192
Target Start/End: Complemental strand, 38233229 - 38233075
Alignment:
Q  36 atctctttggagacccccaggcgccactgcaccccacagtttgcatataaatttcatattatacatgatattataactgatacgttgtcgttgcagtggt 135  Q
    ||||||||||||||||||||| |||||||||| || ||||||  |||||||||||||||||||||||||| |  |||||||||||| |||||| || |||    
T  38233229 atctctttggagacccccaggtgccactgcactcc-cagtttaaatataaatttcatattatacatgatacttcaactgatacgttctcgttgtagcggt 38233131  T
Q  136 catgcggtccctaaatgtattaatggttgcgtgttcgaaccccgacaccctcctttt 192  Q
     ||||||| ||| |||| ||||| ||||| |  ||||| ||| | ||||||||||||    
T  38233130 tatgcggt-cctcaatgcattaaaggttgggcattcgatccctggcaccctcctttt 38233075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 26 - 192
Target Start/End: Original strand, 43410114 - 43410280
Alignment:
Q  26 gcagagtcggatctctttggagacccccaggcgccactgcaccccacagtttgcatataaatttcatattatacatgatattataactgatacgttgtcg 125  Q
    |||| |||||||||| || ||||||| |||| |||||| |||||  || |||  || ||||||||||||||| |||| |||| |||||||||||||||||    
T  43410114 gcagggtcggatctccttagagaccctcaggtgccactacaccct-caatttttatgtaaatttcatattatgcatggtattttaactgatacgttgtcg 43410212  T
Q  126 ttgcagtggtcatgcggtccctaaatgtattaatggttgcgtgttcgaacccc-gacaccctcctttt 192  Q
    ||| || ||| || |||||| | |||||||||| ||| ||| ||| || ||||  |||||||||||||    
T  43410213 ttggagcggttatacggtccatcaatgtattaaaggtcgcgcgtttgatcccctaacaccctcctttt 43410280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 42641990 - 42641926
Alignment:
Q  33 cggatctctttggagacccccaggcgccactgcaccccacagtttgcatataaatttcatattat 97  Q
    |||||||||||||||||||||||| |||||||||||||  || ||  |||||||||| |||||||    
T  42641990 cggatctctttggagacccccaggtgccactgcacccccgaggttttatataaattttatattat 42641926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 106
Target Start/End: Original strand, 25644585 - 25644656
Alignment:
Q  35 gatctctttggagacccccaggcgccactgcaccccacagtttgcatataaatttcatattatacatgatat 106  Q
    ||||||||||||||||| |||  |||| |||||||| ||||||  |||||||||||||||||| | ||||||    
T  25644585 gatctctttggagaccctcagatgccattgcaccccccagttttaatataaatttcatattatgcttgatat 25644656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 8541103 - 8541140
Alignment:
Q  33 cggatctctttggagacccccaggcgccactgcacccc 70  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  8541103 cggatctctttagagacccccaggtgccactgcacccc 8541140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 25644851 - 25644912
Alignment:
Q  191 ttaacaatattgcacaaattttaaaattgtttaatatgtattatgcaaatatttggcacccc 252  Q
    |||||||| ||||||| ||||| || ||||||||||| |||  | |||||||||||||||||    
T  25644851 ttaacaatgttgcacatattttgaatttgtttaatatatatgtttcaaatatttggcacccc 25644912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 70
Target Start/End: Original strand, 27813518 - 27813555
Alignment:
Q  33 cggatctctttggagacccccaggcgccactgcacccc 70  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  27813518 cggatctctttagagacccccaggtgccactgcacccc 27813555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 47278402 - 47278365
Alignment:
Q  33 cggatctctttggagacccccaggcgccactgcacccc 70  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  47278402 cggatctctttagagacccccaggtgccactgcacccc 47278365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 3418996 - 3419060
Alignment:
Q  33 cggatctctttggagacccccaggcgccactgcaccccacagtttgcatataaatttcatattat 97  Q
    |||||||||||||||||||||||  ||||||||||||| ||||||  ||||||||||||||||||    
T  3418996 cggatctctttggagacccccagatgccactgcaccccccagtttttatataaatttcatattat 3419060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 96
Target Start/End: Complemental strand, 29968772 - 29968709
Alignment:
Q  33 cggatctctttggagacccccaggcgccactgcaccccacagtttgcatataaatttcatatta 96  Q
    ||||||||||| |||||||||||| ||||||||||||| ||  ||  |||||||| ||||||||    
T  29968772 cggatctctttagagacccccaggtgccactgcaccccccaacttttatataaatatcatatta 29968709  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 252
Target Start/End: Complemental strand, 34884391 - 34884330
Alignment:
Q  191 ttaacaatattgcacaaattttaaaattgtttaatatgtattatgcaaatatttggcacccc 252  Q
    |||||||||||| |||  |||| ||| |||||||||| |||| | |||||||||||||||||    
T  34884391 ttaacaatattgaacattttttgaaactgtttaatatatattcttcaaatatttggcacccc 34884330  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 147
Target Start/End: Complemental strand, 9457292 - 9457179
Alignment:
Q  33 cggatctctttggagacccccaggcgccactgcaccccacagtttgcatataaatttcatattatacatgatattataactgatacgttgtcgttgcagt 132  Q
    ||||||| |||||||| ||  ||| ||||||||||| | || ||| ||||||||| || ||||||||||||||||  |||||||| ||||| | ||||||    
T  9457292 cggatctttttggagatccttaggtgccactgcacctc-cacttttcatataaatgtcttattatacatgatattgcaactgatatgttgttgctgcagt 9457194  T
Q  133 ggtcatgcggtccct 147  Q
    |||||| ||||||||    
T  9457193 ggtcatacggtccct 9457179  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 33 - 96
Target Start/End: Complemental strand, 8823658 - 8823595
Alignment:
Q  33 cggatctctttggagacccccaggcgccactgcaccccacagtttgcatataaatttcatatta 96  Q
    ||||||||||| ||||||| |||| ||||||||||||| ||||||  |||||||| ||||||||    
T  8823658 cggatctctttagagaccctcaggtgccactgcaccccccagttttgatataaatatcatatta 8823595  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 106
Target Start/End: Original strand, 16204746 - 16204819
Alignment:
Q  33 cggatctctttggagacccccaggcgccactgcaccccacagtttgcatataaatttcatattatacatgatat 106  Q
    ||||||||||| |||||||||||| ||||||||||||| ||   |  |||||||| ||||||||| ||||||||    
T  16204746 cggatctctttagagacccccaggtgccactgcaccccccaacgtttatataaatatcatattatgcatgatat 16204819  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 45071011 - 45071073
Alignment:
Q  33 cggatctctttggagacccccaggcgccactgcaccccacagtttgcatataaatttcatattat 97  Q
    |||||||||||||||| ||||||| ||||||||||||| | ||||  ||||||||||||||||||    
T  45071011 cggatctctttggaga-ccccaggtgccactgcacccc-ccgtttttatataaatttcatattat 45071073  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 49084082 - 49084046
Alignment:
Q  33 cggatctctttggagacccccaggcgccactgcaccc 69  Q
    |||||||||||||||||||||| | ||||||||||||    
T  49084082 cggatctctttggagacccccaagtgccactgcaccc 49084046  T

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Target: scaffold0001 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 33 - 106
Target Start/End: Original strand, 181487 - 181560
Alignment:
Q  33 cggatctctttggagacccccaggcgccactgcaccccacagtttgcatataaatttcatattatacatgatat 106  Q
    |||||||||||||||||||||||  |||||||||||||  |||||  |||||||||||||||||| | ||||||    
T  181487 cggatctctttggagacccccagatgccactgcaccccctagttttaatataaatttcatattatgcttgatat 181560  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 96
Target Start/End: Complemental strand, 13284332 - 13284269
Alignment:
Q  33 cggatctctttggagacccccaggcgccactgcaccccacagtttgcatataaatttcatatta 96  Q
    |||||||||||||||||||||||| ||||||||||||  ||||||  |||||||| ||||||||    
T  13284332 cggatctctttggagacccccaggtgccactgcacccaccagttttgatataaatatcatatta 13284269  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 33 - 97
Target Start/End: Original strand, 4198208 - 4198271
Alignment:
Q  33 cggatctctttggagacccccaggcgccactgcaccccacagtttgcatataaatttcatattat 97  Q
    |||||||||||||||||||| ||| ||||||||||||| ||| ||  ||||||||||||||||||    
T  4198208 cggatctctttggagacccc-aggtgccactgcaccccccaggttttatataaatttcatattat 4198271  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 36565841 - 36565777
Alignment:
Q  33 cggatctctttggagacccccaggcgccactgcaccccacagtttgcatataaatttcatattat 97  Q
    |||||||||||| ||| ||||||| ||||||||||||| ||| ||  ||||||||||||||||||    
T  36565841 cggatctctttgaagatccccaggtgccactgcaccccccagattttatataaatttcatattat 36565777  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 60 - 107
Target Start/End: Original strand, 1787352 - 1787399
Alignment:
Q  60 cactgcaccccacagtttgcatataaatttcatattatacatgatatt 107  Q
    ||||||||||| ||||||  |||||||||||||||||| |||||||||    
T  1787352 cactgcacccctcagtttatatataaatttcatattatgcatgatatt 1787399  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 4198475 - 4198536
Alignment:
Q  191 ttaacaatattgcacaaattttaaaattgtttaatatgtattatgcaaatatttggcacccc 252  Q
    |||||||||||| |||  |||||||| |||||||||| |||| |  ||||||||||||||||    
T  4198475 ttaacaatattgtacattttttaaaactgtttaatatatattctttaaatatttggcacccc 4198536  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 43671488 - 43671451
Alignment:
Q  33 cggatctctttggagacccccaggcgccactgcacccc 70  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  43671488 cggatctctttagagacccccaggtgccactgcacccc 43671451  T

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Target: scaffold0097 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 33 - 96
Target Start/End: Complemental strand, 47651 - 47588
Alignment:
Q  33 cggatctctttggagacccccaggcgccactgcaccccacagtttgcatataaatttcatatta 96  Q
    |||||||||||||||||| | ||| ||||||||||||| ||||||  |||||||| || |||||    
T  47651 cggatctctttggagacctctaggtgccactgcacccctcagttttgatataaatatcgtatta 47588  T

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Target: scaffold0648 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 4644 - 4607
Alignment:
Q  33 cggatctctttggagacccccaggcgccactgcacccc 70  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  4644 cggatctctttagagacccccaggtgccactgcacccc 4607  T

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Target: scaffold0274 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 70
Target Start/End: Complemental strand, 4114 - 4077
Alignment:
Q  33 cggatctctttggagacccccaggcgccactgcacccc 70  Q
    ||||||||||| |||||||||||| |||||||||||||    
T  4114 cggatctctttagagacccccaggtgccactgcacccc 4077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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