View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17104_low_14 (Length: 324)
Name: NF17104_low_14
Description: NF17104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17104_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 24 - 314
Target Start/End: Complemental strand, 5520554 - 5520261
Alignment:
| Q |
24 |
aatgaatgctacggtaccaacaaaaaagaacgaagctcttgactttatttgaattgtttcaatgaaattaataaggattaggattataactacagagg-- |
121 |
Q |
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| T |
5520554 |
aatggatgctacggtaccaacaaaaaagaacgaagctcttgactttatttgaattgtttcaatgaaattaataaggattaggattataactacaaaggca |
5520455 |
T |
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| Q |
122 |
-gatatgataaatttcaggattaacttatcatatattatcgtgtcatcaaacactggactgagacaaaatataatacagttatcatatcatttctcttat |
220 |
Q |
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| T |
5520454 |
ggataggataaatttcaggattaacttatcatatattgtcgtgtcaccaaacactggactgagacagaatatgatacagttatcatatcatgtctcttat |
5520355 |
T |
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| Q |
221 |
catatccatcaacgaaccctaaaggcataagttaccttaaggatctaaaaacgaaattaatatatatgtcagaacacatgtgttgtacgttcat |
314 |
Q |
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| T |
5520354 |
catatccatcaacgaaccctaagggcataagttaacttaaggatctaaaaacgaaattaatatatatgtcagaacacatgtgttgtactttcat |
5520261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 220
Target Start/End: Complemental strand, 23266099 - 23266047
Alignment:
| Q |
168 |
caaacactggactgagacaaaatataatacagttatcatatcatttctcttat |
220 |
Q |
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| T |
23266099 |
caaacattggattgagacaaaatatgatacaattatcatatcatatctcttat |
23266047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 211
Target Start/End: Complemental strand, 41287914 - 41287830
Alignment:
| Q |
127 |
gataaatttcaggattaacttatcatatattatcgtgtcatcaaacactggactgagacaaaatataatacagttatcatatcat |
211 |
Q |
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| T |
41287914 |
gataagtttcaggattaatttatcatatcttgttgtgtaagcaaactctggattaagacaaaatatgatacatttatcctatcat |
41287830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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