View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17104_low_16 (Length: 308)

Name: NF17104_low_16
Description: NF17104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17104_low_16
NF17104_low_16
[»] chr5 (3 HSPs)
chr5 (18-284)||(25379750-25380015)
chr5 (18-284)||(25483030-25483295)
chr5 (42-196)||(17515148-17515302)
[»] chr6 (2 HSPs)
chr6 (18-284)||(19309833-19310098)
chr6 (25-284)||(10126042-10126300)
[»] chr1 (3 HSPs)
chr1 (18-284)||(28247142-28247407)
chr1 (22-284)||(11471646-11471909)
chr1 (23-284)||(50027008-50027273)
[»] chr2 (4 HSPs)
chr2 (18-284)||(38254957-38255224)
chr2 (18-284)||(43154319-43154586)
chr2 (112-196)||(15021968-15022053)
chr2 (68-176)||(23937083-23937190)
[»] chr7 (2 HSPs)
chr7 (18-284)||(22491923-22492187)
chr7 (42-196)||(37163139-37163293)
[»] chr4 (2 HSPs)
chr4 (18-284)||(48793116-48793377)
chr4 (18-128)||(26283525-26283635)


Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 25379750 - 25380015
Alignment:
18 aatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataacaacacttgattaagaagataaaacaatcgtttttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
25379750 aatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataacaacacttgatcaagaagataaaacaatcgtttttg 25379849  T
118 aactagtttcaatttattaggatttgattttaggaaatttaaggttttatttaaggatgtatagaacccattgcaatgtctactaaactctatttcnnnn 217  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||        
25379850 aactagtttcaatttattaggatttgattttaggaaatttagggttttatttaaggatgtatataacccattgcaatgtctactaaactctgtttctttt 25379949  T
218 nnnaaaaagcttgactcatgttgttgttgttttgaaaaaaggcaaaggggattgattgatccttgaa 284  Q
       ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
25379950 tttaaaaagcttgactcatgttgttgttgttttg-aaaaaggcaaaggggattgattgatccttgaa 25380015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 25483030 - 25483295
Alignment:
18 aatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataacaacacttgattaagaagataaaacaatcgtttttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
25483030 aatgttcatagaaatgagattaacccataataaaaatcaaaatttttatgaaaatagagaataacaacacttgatcaagaagataaaacaatcgtttttg 25483129  T
118 aactagtttcaatttattaggatttgattttaggaaatttaaggttttatttaaggatgtatagaacccattgcaatgtctactaaactctatttcnnnn 217  Q
    |||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||| ||||||||| |||||||||||||||||||||| ||||        
25483130 aactagtttcaattgattaggatttgattttaggaattttagggttttatttaaggatatatagaacctattgcaatgtctactaaactctgtttctttt 25483229  T
218 nnnaaaaagcttgactcatgttgttgttgttttgaaaaaaggcaaaggggattgattgatccttgaa 284  Q
       ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
25483230 tttaaaaagcttgactcatgttgttgttgttttg-aaataggcaaaggggattgattgatccttgaa 25483295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 42 - 196
Target Start/End: Complemental strand, 17515302 - 17515148
Alignment:
42 ccataataaaaatcaaaatttctatgaaaatagagaataacaacacttgattaagaagataaaacaatcgtttttgaactagtttcaatttattaggatt 141  Q
    |||||||| ||||||||||||| ||||||  | ||||||  |||||||||||| |||    |||||| | |||||||||||||||||||| ||| |||||    
17515302 ccataatagaaatcaaaatttcaatgaaagcaaagaataggaacacttgattaggaact--aaacaaacctttttgaactagtttcaattcattgggatt 17515205  T
142 tgattttaggaaatttaagg-ttttatttaaggatg-tatagaacccattgcaatgt 196  Q
    ||||||||| ||||||| || |||||||| |||||| || |||||||||| ||||||    
17515204 tgattttagaaaatttagggtttttattttaggatgatacagaacccattacaatgt 17515148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 19310098 - 19309833
Alignment:
18 aatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataacaacacttgattaagaagataaaacaatcgtttttg 117  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||| |||||||    
19310098 aatgatcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataacaacagttgatcaaga-gataaaacaattgtttttg 19310000  T
118 aactagtttcaatttattaggatttgattttaggaaatttaaggttttatttaaggatgtatagaacccattgcaatgtctactaaactctatttcnnnn 217  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||        
19309999 aactagtttcaatttattaggatttgattttaggaaatttagggttttatttaaggatgtatagaacccattgcaatgtctactaaactctgtttctttt 19309900  T
218 nnnaaaaagcttgactcatgttgttgttgttttgaaaaaaggcaaaggggattgattgatccttgaa 284  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
19309899 ttaaaaaagcttgactcatgttgttgttgttttgaaaaaaggcaaaggggattgattgatccttgaa 19309833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 25 - 284
Target Start/End: Complemental strand, 10126300 - 10126042
Alignment:
25 atagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataacaacacttgattaagaagataaaacaatcgtttttgaactagt 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||| |||  |||||||||||||    
10126300 atagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataacaacagttgatcaaga-gataaaataattttttttgaactagt 10126202  T
125 ttcaatttattaggatttgattttaggaaatttaaggttttatttaaggatgtatagaacccattgcaatgtctactaaactctatttcnnnnnnnaaaa 224  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||       ||||    
10126201 ttcaatttattaggatttgattttaggaaatttagggttttatttaaggatgtatataacccattgcaatgtttactaaactctgtttctttttttaaaa 10126102  T
225 agcttgactcatgttgttgttgttttgaaaaaaggcaaaggggattgattgatccttgaa 284  Q
    || |||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
10126101 agtttgactcatgttgttgttgttttgaaaaaaggcaaagggttttgattgatccttgaa 10126042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 28247407 - 28247142
Alignment:
18 aatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataacaacacttgattaagaagataaaacaatcgtttttg 117  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||| |||||||    
28247407 aatgttcatagaaatgagattaacccgtaataaaaatcaaaatttctatgaaaatagagaataacaacagttgatcaaga-gataaaacaattgtttttg 28247309  T
118 aactagtttcaatttattaggatttgattttaggaaatttaaggttttatttaaggatgtatagaacccattgcaatgtctactaaactctatttcnnnn 217  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||        
28247308 aactagtttcaatttattaggatttgattttaggaaatttagggttttatttaaggatgtatataacccattgcaatgtttactaaactctgtttctttt 28247209  T
218 nnnaaaaagcttgactcatgttgttgttgttttgaaaaaaggcaaaggggattgattgatccttgaa 284  Q
       ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
28247208 tttaaaaagcttgactcatgttgttgttgttttgaaaaaaggcaaagggttttgattgatccttgaa 28247142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 22 - 284
Target Start/End: Original strand, 11471646 - 11471909
Alignment:
22 ttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataacaacacttgattaagaagataaaacaatcgtttttgaact 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||| |||||||||||  ||||||||||    
11471646 ttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataacaacggttgatcaaga-gataaaacaattatttttgaact 11471744  T
122 agtttcaatttattaggatttgattttaggaaatttaaggttttatttaaggatgtatagaacccattgcaatgtctactaaactctatttc--nnnnnn 219  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||            
11471745 agtttcaatttattaggatttgattttaggaaatttagggttttatttaaggatgtatataacccattgcaatgtttactaaactctgtttctttttttt 11471844  T
220 naaaaagcttgactcatgttgttgttgttttgaaaaaaggcaaaggggattgattgatccttgaa 284  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
11471845 aaaaaagcttgactcatgttgttgttgttttgaaaaaaggcaaaggggattgattgatccttgaa 11471909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 23 - 284
Target Start/End: Complemental strand, 50027273 - 50027008
Alignment:
23 tcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataacaacacttgattaagaagataaaacaatcgtttttgaacta 122  Q
    |||||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||    
50027273 tcatagaaatgagattaacccaaaataaaa-tcaaaatttatatgaaaatagagaataacaacacttgatcaagaagataaaacaaccgtttttgaacta 50027175  T
123 gtttcaatttattaggatttgattttaggaaatttaaggttttatttaaggatgtatagaacccattgcaatgtctac-taaactc-----tatttcnnn 216  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||| ||||||||||||| |||||||||||||||| || ||||     | |||        
50027174 gtttcaatttattaggatttgaatttaggaaatttagggttttatttcaggatgtatagaatccattgcaatgtctacatatactctgtttttttttttt 50027075  T
217 nnnnaaaaagcttgactcatgttgttgttgttttgaaaaaaggcaaaggggattgattgatccttgaa 284  Q
           |||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
50027074 tttttttaagcttgactcatgttgttgttgttttg-aaataggcaaaggggattgattgatccttgaa 50027008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 38255224 - 38254957
Alignment:
18 aatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataacaacacttgattaagaagataaaacaatcgtttttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||| ||||||||||| |||||||    
38255224 aatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataacaacggttgatcaaga-gataaaacaattgtttttg 38255126  T
118 aactagtttcaatttattaggatttgattttaggaaatttaaggttttatttaaggatgtatagaacccattgcaatgtctactaaactctatttc--nn 215  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||        
38255125 aactagtttcaatttattaggatttgattttaggaaatttagggttttatttaaggatgtatataacccattgcaatgtttactaaactctgtttctttt 38255026  T
216 nnnnnaaaaagcttgactcatgttgttgttgttttgaaaaaaggcaaaggggattgattgatccttgaa 284  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
38255025 ttttaaaaaagcttgactcatgttgttgttgttttgaaaaaaggcaaaggggattgattgatccttgaa 38254957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 43154319 - 43154586
Alignment:
18 aatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataacaacacttgattaagaagataaaacaatcgtttttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||| ||||||||||| |||||||    
43154319 aatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataacaacggttgatcaaga-gataaaacaattgtttttg 43154417  T
118 aactagtttcaatttattaggatttgattttaggaaatttaaggttttatttaaggatgtatagaacccattgcaatgtctactaaactctatttc--nn 215  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||        
43154418 aactagtttcaatttattaggatttgattttaggaaatttagggttttatttaaggatgtatataacccattgcaatgtttactaaactctgtttctttt 43154517  T
216 nnnnnaaaaagcttgactcatgttgttgttgttttgaaaaaaggcaaaggggattgattgatccttgaa 284  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
43154518 ttttaaaaaagcttgactcatgttgttgttgttttgaaaaaaggcaaaggggattgattgatccttgaa 43154586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 112 - 196
Target Start/End: Complemental strand, 15022053 - 15021968
Alignment:
112 tttttgaactagtttcaatttattaggatttgattttaggaaatttaaggttttatttaaggatg-tatagaacccattgcaatgt 196  Q
    |||||||||||  ||||||| |||||||||||||||||| |||||||  ||||| |||||||||| |||||||||| |||||||||    
15022053 tttttgaactatcttcaattcattaggatttgattttagaaaatttagagttttttttaaggatgatatagaaccccttgcaatgt 15021968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 176
Target Start/End: Complemental strand, 23937190 - 23937083
Alignment:
68 aaaatagagaataacaacacttgattaagaagataaaacaatcgtttttgaactagtttcaatttattaggatttgattttaggaaatttaaggttttat 167  Q
    ||||||||||||||| |||||| | || ||| |||||| || | |||| ||||||| |||||||||||||| ||||||| ||||||||||| | ||||||    
23937190 aaaatagagaataactacacttaagtaggaaaataaaataaacctttt-gaactagcttcaatttattagggtttgattataggaaatttaggattttat 23937092  T
168 ttaaggatg 176  Q
    || ||||||    
23937091 tttaggatg 23937083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 178; Significance: 5e-96; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 22492187 - 22491923
Alignment:
18 aatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataacaacacttgattaagaagataaaacaatcgtttttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||| |||||||    
22492187 aatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaatagcaacactt-atcaagaagataaaacaattgtttttg 22492089  T
118 aactagtttcaatttattaggatttgattttaggaaatttaaggttttatttaaggatgtatagaacccattgcaatgtctactaaactctatttcnnnn 217  Q
    |||||||||||||||||||||||||||||||||||||||||  ||||||||| ||||||||||||||| |||||||| ||||||||||| | ||||        
22492088 aactagtttcaatttattaggatttgattttaggaaatttagagttttatttgaggatgtatagaaccaattgcaatatctactaaactttgtttctttt 22491989  T
218 nnnaaaaagcttgactcatgttgttgttgttttgaaaaaaggcaaaggggattgattgatccttgaa 284  Q
       |||||| |||||||||||||||||||||||| ||| ||||||||||||||||||||| ||||||    
22491988 tttaaaaagtttgactcatgttgttgttgttttg-aaataggcaaaggggattgattgattcttgaa 22491923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 42 - 196
Target Start/End: Original strand, 37163139 - 37163293
Alignment:
42 ccataataaaaatcaaaatttctatgaaaatagagaataacaacacttgattaagaagataaaacaatcgtttttgaactagtttcaatttattaggatt 141  Q
    |||||||| ||||||||||||| ||||||  | ||||||  |||||||||||| ||| |  |||||| | |||||||||||||||||||| ||| |||||    
37163139 ccataatagaaatcaaaatttcaatgaaaggaaagaataggaacacttgattaggaaca--aaacaaacctttttgaactagtttcaattcattgggatt 37163236  T
142 tgattttaggaaatttaagg-ttttatttaaggatg-tatagaacccattgcaatgt 196  Q
    ||||||||||||||||| || ||||||| ||||||| || | |||||||||||||||    
37163237 tgattttaggaaatttagggtttttattgaaggatgatacataacccattgcaatgt 37163293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 161; Significance: 7e-86; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 48793116 - 48793377
Alignment:
18 aatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataacaacacttgattaagaagataaaacaatcgtttttg 117  Q
    |||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
48793116 aatgttcatagaaatgagattaacccataaaaaaaa-caaattttctatgaaaatagagaataacaacacttgatcaagaagataaaataatcgtttttg 48793214  T
118 aactagtttcaatttattaggatttgattttaggaaatttaaggttttatttaaggatgtatagaacccattgcaatgtctactaaactctatttc-nnn 216  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||   || | |||||||| ||||        
48793215 aactagtttcaatttattaggatttgattttaggaaatttagggttttatttaaggatgtatagaacccattgca---tcca-taaactctgtttctttt 48793310  T
217 nnnnaaaaagcttgactcatgttgttgttgttttgaaaaaaggcaaaggggattgattgatccttgaa 284  Q
        ||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||| |||||||    
48793311 tttaaaaaagcttgactcatgttgttgttgttttg-aaataggcaaacgggattgattgacccttgaa 48793377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 128
Target Start/End: Complemental strand, 26283635 - 26283525
Alignment:
18 aatgttcatagaaatgagattaacccataataaaaatcaaaatttctatgaaaatagagaataacaacacttgattaagaagataaaacaatcgtttttg 117  Q
    |||| |||||| |||||||| || |||| || ||||| |||||||  |  ||||||||||||||||||||||||| ||||||||||||||| ||||||||    
26283635 aatgctcataggaatgagatcaaaccatgattaaaattaaaatttaaacaaaaatagagaataacaacacttgatcaagaagataaaacaaacgtttttg 26283536  T
118 aactagtttca 128  Q
    |||||| ||||    
26283535 aactagcttca 26283525  T

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