View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17104_low_2 (Length: 575)
Name: NF17104_low_2
Description: NF17104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17104_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 317; Significance: 1e-178; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 17 - 337
Target Start/End: Complemental strand, 42743608 - 42743288
Alignment:
| Q |
17 |
aataagaatgtccaaaacaaacccttgaaataacatcagctgaaaagcccctcaaatcagcatcaactttaacttcagcttttgcacctccttggtcctc |
116 |
Q |
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| T |
42743608 |
aataagaatgtccaaaacaaacccttgaaataacatcagctgaaaagcccctcaaatcagcatcaactttaacttcagcttttgcacctccttggtcctc |
42743509 |
T |
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| Q |
117 |
tataatttgttcccattttaagagtaatggctgtgctgcctctatcataaggcccaccatgccctgccacaataccatccaaacataatttatttatctt |
216 |
Q |
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| T |
42743508 |
tataatttgttcccattttaagagtaatggctgtgctgcctctatcataaggcccaccatgccctgccacaataccatccaaacataatttatttatctt |
42743409 |
T |
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| Q |
217 |
agccagaaaaagactaacacatataattactctggtccaatccagtacactgtgcaagtgaagtggtgttctttcctcaaactggaagcaaacaggtgat |
316 |
Q |
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| T |
42743408 |
agccagaaaaagactaacacatataattactcgggtccaatccagtacactgtgcaagtgaagtggtgttctttcctcaaactggaagcaaacaggtgat |
42743309 |
T |
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| Q |
317 |
ggtggagggacatccctttcc |
337 |
Q |
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| T |
42743308 |
ggtggagggacatccctttcc |
42743288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 5e-76
Query Start/End: Original strand, 378 - 526
Target Start/End: Complemental strand, 42743248 - 42743100
Alignment:
| Q |
378 |
ccatagaccagtcatgatcatgggacatgataagctttatcttctcttatcttgtggggctaattgcatatatattgaagatattgctatccagctccaa |
477 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42743248 |
ccatagaccagtcatgatcatgggacatgataagctttatcttctcttatcttgtggggctaattgcatatagattgaagatattgctatccagctccaa |
42743149 |
T |
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| Q |
478 |
tatgatttgtccatatagtgtataactagtctactagtaggttttcagg |
526 |
Q |
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| T |
42743148 |
tatgatttgtccatatagtgtataactagtctactagtaggttttcagg |
42743100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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