View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17104_low_20 (Length: 278)
Name: NF17104_low_20
Description: NF17104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17104_low_20 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 38447615 - 38447864
Alignment:
| Q |
1 |
gatgtctcaaataagcagttttcaaagttggttgatgattcaaatatgttctacaataatgtgggaagtacttctacaagcaatcatactacctcaagat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38447615 |
gatgtctcaaataagcagttttcaaagttggttgatgattcaaatatgttctacaataatgtgggaagtacttctacaagcaatcatactacctcgagat |
38447714 |
T |
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| Q |
101 |
tgattgataggtgagtagattatgcattgctattctcttttatatatatctattagtgttgccaatattaataatagttttccgtnnnnnnnttatacgt |
200 |
Q |
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|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
38447715 |
tgattgataggtgagtagattatgcattgc------------tatacatctattagtgttgccaatattaataatagttttctgtaaaaaaattatacgt |
38447802 |
T |
|
| Q |
201 |
taaatttacaattactttcgtcaatttcaggggtggcgctggaattttacctatacttttga |
262 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38447803 |
taaatttacaattactttcgtcaatttcaggggtggcgctggaatttcacctatacttttga |
38447864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 38181145 - 38181178
Alignment:
| Q |
41 |
caaatatgttctacaataatgtgggaagtacttc |
74 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| |
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| T |
38181145 |
caaacatgttctacaataatgtgggaagtacttc |
38181178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 38189986 - 38189953
Alignment:
| Q |
41 |
caaatatgttctacaataatgtgggaagtacttc |
74 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| |
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| T |
38189986 |
caaacatgttctacaataatgtgggaagtacttc |
38189953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 38208369 - 38208402
Alignment:
| Q |
41 |
caaatatgttctacaataatgtgggaagtacttc |
74 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| |
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| T |
38208369 |
caaacatgttctacaataatgtgggaagtacttc |
38208402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 74
Target Start/End: Complemental strand, 38217211 - 38217178
Alignment:
| Q |
41 |
caaatatgttctacaataatgtgggaagtacttc |
74 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| |
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| T |
38217211 |
caaacatgttctacaataatgtgggaagtacttc |
38217178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 74
Target Start/End: Original strand, 38456505 - 38456538
Alignment:
| Q |
41 |
caaatatgttctacaataatgtgggaagtacttc |
74 |
Q |
| |
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|||| ||||||||||||||||||||||||||||| |
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| T |
38456505 |
caaacatgttctacaataatgtgggaagtacttc |
38456538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 9e-39; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 38342950 - 38343063
Alignment:
| Q |
32 |
ttgatgattcaaatatgttctacaataatgtgggaagtacttctacaagcaatcatactacctcaagattgattgataggtgagtagattatgcattgct |
131 |
Q |
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|
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| || | |||||||||||||||||| ||||||||| ||| |
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| T |
38342950 |
ttgatgattcaaatatgttcttcaataatgtgggaagtacttctacatgcaatcatactacttctacattgattgataggtgagttgattatgcaatgcc |
38343049 |
T |
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| Q |
132 |
attctcttttatat |
145 |
Q |
| |
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|||||||||||||| |
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| T |
38343050 |
attctcttttatat |
38343063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 38447143 - 38447256
Alignment:
| Q |
32 |
ttgatgattcaaatatgttctacaataatgtgggaagtacttctacaagcaatcatactacctcaagattgattgataggtgagtagattatgcattgct |
131 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||| || | |||||||||||||||||| ||||||||| ||| |
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| T |
38447143 |
ttgatgattcaaatatgttcttcaataatgtgggaagtacttctacatgcaatcatactacttctacattgattgataggtgagttgattatgcaatgcc |
38447242 |
T |
|
| Q |
132 |
attctcttttatat |
145 |
Q |
| |
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|||||||||||||| |
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|
| T |
38447243 |
attctcttttatat |
38447256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 111
Target Start/End: Complemental strand, 6067776 - 6067706
Alignment:
| Q |
41 |
caaatatgttctacaataatgtgggaagtacttctacaagcaatcatactacctcaagattgattgatagg |
111 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||||||||| |||| ||||||||||||| |
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| T |
6067776 |
caaacatgttctacaataacgtgggaagtacttctacaagcaatcatactacttcaacattgattgatagg |
6067706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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