View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17104_low_29 (Length: 243)

Name: NF17104_low_29
Description: NF17104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17104_low_29
NF17104_low_29
[»] chr3 (2 HSPs)
chr3 (124-229)||(7035167-7035272)
chr3 (14-111)||(7035314-7035409)
[»] chr1 (2 HSPs)
chr1 (31-111)||(39746138-39746218)
chr1 (124-229)||(39746260-39746365)


Alignment Details
Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 124 - 229
Target Start/End: Complemental strand, 7035272 - 7035167
Alignment:
Q  124 tacaaaactccaagatgtattaagtctaagaaagcacttaagttgcttaaatctaaagtttcggcttcnnnnnnnagtcctagagatcctaaatggggtc 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||    
T  7035272 tacaaaactccaagatgtattaagtctaagaaagcacttaagttgcttaaatctaaagtttcggcttctttttttagtcctagagatcctaaatggggtc 7035173  T
Q  224 ctaatt 229  Q
    ||||||    
T  7035172 ctaatt 7035167  T

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Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 7035409 - 7035314
Alignment:
Q  14 aggaattggattatgtatatacagaagatgtcgtaccaatgataaatctgttggaccgttagagatacgtgtggtggagccaggaacttttgaggcat 111  Q
    |||||||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7035409 aggaattggattatgtata--cagaagatgccgtaccaatgataaatctgttggaccgttagagatacgtgtggtggagccaggaacttttgaggcat 7035314  T

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Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 31 - 111
Target Start/End: Original strand, 39746138 - 39746218
Alignment:
Q  31 tatacagaagatgtcgtaccaatgataaatctgttggaccgttagagatacgtgtggtggagccaggaacttttgaggcat 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39746138 tatacagaagatgtcgtaccaatgataaatctgttggaccgttagagatacgtgtggtggagccaggaacttttgaggcat 39746218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 124 - 229
Target Start/End: Original strand, 39746260 - 39746365
Alignment:
Q  124 tacaaaactccaagatgtattaagtctaagaaagcacttaagttgcttaaatctaaagtttcggcttcnnnnnnnagtcctagagatcctaaatggggtc 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||       |||||||||||||||||||||||||    
T  39746260 tacaaaactccaagatgtattaagtctaagaaagcacttaagttgcttaagtctaaagtttcggcttctttttttagtcctagagatcctaaatggggtc 39746359  T
Q  224 ctaatt 229  Q
    ||||||    
T  39746360 ctaatt 39746365  T

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