View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17104_low_3 (Length: 502)
Name: NF17104_low_3
Description: NF17104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17104_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 406; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 50 - 492
Target Start/End: Original strand, 21327979 - 21328425
Alignment:
| Q |
50 |
tcaaatcataaacaatgaatgtaaacaattacaaaatgaacataactattactaataataacagaaagaaataactgttgct----gatgcaaacaaaaa |
145 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
21327979 |
tcaaatcataaacaatgaatgtaaacaattacaaaatgaacataactattactaataataacagaaagaaataactgttgctcgctgatgcaaacaaaaa |
21328078 |
T |
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| Q |
146 |
acacataacatgaaatagctgcaataatggaatactagaagtgaatggtttcaagaaagaacgtagatacaaatgaatgaatatccctacacggtgctaa |
245 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
21328079 |
acacataacatgaaatagctgcaataatggaatactagaagtgaatggtttctagaaagaacgtagatacaaatgaatgaatatccctatacggtgctaa |
21328178 |
T |
|
| Q |
246 |
gctcttacaaaggaaaataccctctatccgtaacgaacaatgattttcctgagatgccccataattctatttgacaacattggatggcatattcgaattt |
345 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21328179 |
gctcttacaaaggaaaatgccctctatccgtaacgaacaatgattttcctgagatgccccataattctatttgacaacattggatggcatattcgaattt |
21328278 |
T |
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| Q |
346 |
tcactattggccgccatttgtcagctacaattgctactaaaaacacaactcaatggaattttgcatagcgcctaggggccgctgcaagaggaataacctt |
445 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
21328279 |
tcactattggccgccatttgtcagctacaattgctactaaaaacacaactcaacggaattttgcatagcgcctaggggccgctacaagaggtataacctt |
21328378 |
T |
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| Q |
446 |
aaaaccccaaactgctatgtgattcacaagcaacatgtggtcctttg |
492 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21328379 |
aaaaccccaaactgctatgtgattcacaagcaacatgtggtcctttg |
21328425 |
T |
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