View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17104_low_30 (Length: 241)
Name: NF17104_low_30
Description: NF17104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17104_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 4 - 198
Target Start/End: Original strand, 2706005 - 2706199
Alignment:
| Q |
4 |
aattgtggtcgcaacataaaaactttcaagtctttacaactcgattgcaactgcaattgaggccgcatcagcagtatttgttcacgttttcacaatatga |
103 |
Q |
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| T |
2706005 |
aattgtggtcgcaacataaaaactttcaagtctttacaactcgattgcaactgcaatggaggccgcatcagcagtatttgttcacgttttcacaatatga |
2706104 |
T |
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| Q |
104 |
agacgaaaccacaatatagaactatgagtttaacctgtaatttataaaatttctaaccaatttcataatagatttatttcttaatctatcgtcct |
198 |
Q |
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| T |
2706105 |
agacgaaaccacaatatagaactaggagtttaacctgtaatttataaaatttctaaccaattttattatagatttatttcttaatctatcgtcct |
2706199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 9 - 165
Target Start/End: Original strand, 2697082 - 2697241
Alignment:
| Q |
9 |
tggtcgcaacataaaaactttcaagtctttacaactcgattgcaactgcaattgaggccgcatcagcagtatttgttcacgttttcacaatatgaagacg |
108 |
Q |
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|||| |||||||||| ||||| || ||||| || | ||| || || ||||||||||| |||||| || ||||||||||||||||||||||||||| || |
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| T |
2697082 |
tggttgcaacataaatactttgaaacctttaaaaattgatcgctacagcaattgaggctacatcagtagcatttgttcacgttttcacaatatgaagtcg |
2697181 |
T |
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| Q |
109 |
aaaccacaatatagaactatgagt---ttaacctgtaatttataaaatttctaaccaatt |
165 |
Q |
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| T |
2697182 |
aaaccacaatttagaactatcagtctattaacctttattttataaaatttctaacaaatt |
2697241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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