View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17104_low_31 (Length: 221)

Name: NF17104_low_31
Description: NF17104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17104_low_31
NF17104_low_31
[»] chr5 (7 HSPs)
chr5 (1-207)||(34232448-34232654)
chr5 (7-200)||(41713209-41713402)
chr5 (39-193)||(41571703-41571857)
chr5 (39-200)||(42129131-42129292)
chr5 (37-202)||(34240227-34240392)
chr5 (39-202)||(42118007-42118170)
chr5 (13-164)||(42123782-42123933)
[»] chr2 (2 HSPs)
chr2 (58-164)||(12248744-12248850)
chr2 (115-202)||(11994136-11994223)
[»] chr6 (2 HSPs)
chr6 (37-164)||(25522713-25522840)
chr6 (52-164)||(24141113-24141225)
[»] chr3 (1 HSPs)
chr3 (71-202)||(8523352-8523483)
[»] chr4 (1 HSPs)
chr4 (52-164)||(11118427-11118539)


Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 34232448 - 34232654
Alignment:
Q  1 tctctttgtcgatttgcagtatgaaatcacttcgaattctcaacttggcgcacaacaaattgaccggtatcattccacaatatcttgctaatttatcatc 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34232448 tctctttgtcgatttgcagtatgaaatcacttcgatttctcaacttggcgcacaacaaattgaccggtatcattccacaatatcttgctaatttatcatc 34232547  T
Q  101 ccttcaagtcttggatctacaaatgaatagattttatggcgctttgccaagtaacttctcaaagtacagtgaccttcggagtctgaatctcaatggcaac 200  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34232548 cctacaagtcttggatctacaaatgaatagattttatggcgctttgccaagtaacttctcaaagtacagtgaccttcggagtctgaatctcaatggcaac 34232647  T
Q  201 catatag 207  Q
    |||||||    
T  34232648 catatag 34232654  T

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Target: chr5; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 7 - 200
Target Start/End: Original strand, 41713209 - 41713402
Alignment:
Q  7 tgtcgatttgcagtatgaaatcacttcgaattctcaacttggcgcacaacaaattgaccggtatcattccacaatatcttgctaatttatcatcccttca 106  Q
    |||| ||||||| |||||  |||||  || |||||||||||||  ||||||||||||| |||| ||||||||||| ||||||||||||||||| |||| |    
T  41713209 tgtcaatttgcaatatgagttcactgggatttctcaacttggcaaacaacaaattgactggtaccattccacaatgtcttgctaatttatcataccttga 41713308  T
Q  107 agtcttggatctacaaatgaatagattttatggcgctttgccaagtaacttctcaaagtacagtgaccttcggagtctgaatctcaatggcaac 200  Q
    ||| ||||||||||||||||| | |||||||||| |||||||||||||||| |||||| ||||||| ||||  | ||| |||||| ||||||||    
T  41713309 agttttggatctacaaatgaacaaattttatggcactttgccaagtaacttttcaaaggacagtgagcttcatactctaaatctctatggcaac 41713402  T

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Target: chr5; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 39 - 193
Target Start/End: Original strand, 41571703 - 41571857
Alignment:
Q  39 ctcaacttggcgcacaacaaattgaccggtatcattccacaatatcttgctaatttatcatcccttcaagtcttggatctacaaatgaatagattttatg 138  Q
    ||||||||||| |||||||||||||| || | ||||||||| | |||||| || ||||||||||||||||| |||||| |||||||||| | ||||||||    
T  41571703 ctcaacttggcacacaacaaattgacaggcaccattccacattgtcttgcaaacttatcatcccttcaagttttggatttacaaatgaacaaattttatg 41571802  T
Q  139 gcgctttgccaagtaacttctcaaagtacagtgaccttcggagtctgaatctcaa 193  Q
    || |||| ||||||||||| ||||||||| |||||||||| | ||||||| ||||    
T  41571803 gcactttaccaagtaacttttcaaagtactgtgaccttcgtactctgaatttcaa 41571857  T

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Target: chr5; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 39 - 200
Target Start/End: Complemental strand, 42129292 - 42129131
Alignment:
Q  39 ctcaacttggcgcacaacaaattgaccggtatcattccacaatatcttgctaatttatcatcccttcaagtcttggatctacaaatgaatagattttatg 138  Q
    ||||||||||| |||||  | ||||| | |||||||||||||| ||||||||||| ||| | ||||||||| |||||| | |||||||||||||||||||    
T  42129292 ctcaacttggcacacaatcatttgacagatatcattccacaatgtcttgctaattcatcgttccttcaagttttggatttgcaaatgaatagattttatg 42129193  T
Q  139 gcgctttgccaagtaacttctcaaagtacagtgaccttcggagtctgaatctcaatggcaac 200  Q
    |  |||||||||||||||| ||| ||||| |||| |||| || ||| |||||| ||||||||    
T  42129192 gaactttgccaagtaacttttcagagtactgtgagcttcagactctaaatctccatggcaac 42129131  T

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Target: chr5; HSP #5
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 37 - 202
Target Start/End: Original strand, 34240227 - 34240392
Alignment:
Q  37 ttctcaacttggcgcacaacaaattgaccggtatcattccacaatatcttgctaatttatcatcccttcaagtcttggatctacaaatgaatagatttta 136  Q
    ||||||||||||  |||||||| || || |||| ||||||||||| ||||||||||||| ||||||||||| | ||||||||||||||||| |  |||||    
T  34240227 ttctcaacttgggacacaacaatttcacaggtaacattccacaatgtcttgctaatttaccatcccttcaaattttggatctacaaatgaacaactttta 34240326  T
Q  137 tggcgctttgccaagtaacttctcaaagtacagtgaccttcggagtctgaatctcaatggcaacca 202  Q
    |||| ||||||| | |||||| ||||||| |||| | |||   | |||||||||||||| ||||||    
T  34240327 tggcactttgcctaataacttttcaaagtccagtaaacttattactctgaatctcaatgacaacca 34240392  T

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Target: chr5; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 39 - 202
Target Start/End: Complemental strand, 42118170 - 42118007
Alignment:
Q  39 ctcaacttggcgcacaacaaattgaccggtatcattccacaatatcttgctaatttatcatcccttcaagtcttggatctacaaatgaatagattttatg 138  Q
    ||||||||||| |||||  ||||||| |  ||||||||||||| ||||||||||| ||||  ||||||||| |||||| | |||||||||||||||||||    
T  42118170 ctcaacttggcacacaatcaattgacagacatcattccacaatgtcttgctaattcatcaatccttcaagttttggatttgcaaatgaatagattttatg 42118071  T
Q  139 gcgctttgccaagtaacttctcaaagtacagtgaccttcggagtctgaatctcaatggcaacca 202  Q
    |  |||||||||||||||| ||| || || |||  |||| || ||| |||||| ||||||||||    
T  42118070 gaactttgccaagtaacttttcagaggactgtgtgcttcagactctaaatctccatggcaacca 42118007  T

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Target: chr5; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 13 - 164
Target Start/End: Complemental strand, 42123933 - 42123782
Alignment:
Q  13 tttgcagtatgaaatcacttcgaattctcaacttggcgcacaacaaattgaccggtatcattccacaatatcttgctaatttatcatcccttcaagtctt 112  Q
    |||||| |||||  ||||||| | ||||||||||||   ||||| | ||||| |||||||||||||||| | ||||| | | | ||||||||||||| ||    
T  42123933 tttgcaatatgagttcacttcaatttctcaacttgggttacaacgatttgactggtatcattccacaatgttttgctgaatcaccatcccttcaagtttt 42123834  T
Q  113 ggatctacaaatgaatagattttatggcgctttgccaagtaacttctcaaag 164  Q
    | ||||||||||||| |  ||||||||  |||||||||||||||| ||||||    
T  42123833 gaatctacaaatgaacatgttttatggtactttgccaagtaacttttcaaag 42123782  T

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Target: chr2 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 58 - 164
Target Start/End: Complemental strand, 12248850 - 12248744
Alignment:
Q  58 aattgaccggtatcattccacaatatcttgctaatttatcatcccttcaagtcttggatctacaaatgaatagattttatggcgctttgccaagtaactt 157  Q
    ||||||| |||||||||||||||| ||||||| ||||||||||||||||||| ||| ||||||||||||| | |||| ||||| ||||||||||||||||    
T  12248850 aattgacaggtatcattccacaatgtcttgctgatttatcatcccttcaagttttgaatctacaaatgaacaaatttcatggcactttgccaagtaactt 12248751  T
Q  158 ctcaaag 164  Q
    |||||||    
T  12248750 ctcaaag 12248744  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 202
Target Start/End: Original strand, 11994136 - 11994223
Alignment:
Q  115 atctacaaatgaatagattttatggcgctttgccaagtaacttctcaaagtacagtgaccttcggagtctgaatctcaatggcaacca 202  Q
    ||||||||||||| | || | ||||| ||||||||||||||||||||||| | ||||  |||  || |||||||||| ||||||||||    
T  11994136 atctacaaatgaacacatgtcatggcactttgccaagtaacttctcaaaggagagtgcacttgagactctgaatctctatggcaacca 11994223  T

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Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 37 - 164
Target Start/End: Original strand, 25522713 - 25522840
Alignment:
Q  37 ttctcaacttggcgcacaacaaattgaccggtatcattccacaatatcttgctaatttatcatcccttcaagtcttggatctacaaatgaatagatttta 136  Q
    ||||||||||||   ||||||| ||||| |||||||||||||||| ||||||| | | | ||||||||||||| ||| |||||||||||||||||||| |    
T  25522713 ttctcaacttgggatacaacaatttgactggtatcattccacaatgtcttgctgaatcaacatcccttcaagttttgaatctacaaatgaatagatttca 25522812  T
Q  137 tggcgctttgccaagtaacttctcaaag 164  Q
    |||| |||||||||||||||| ||||||    
T  25522813 tggcactttgccaagtaacttttcaaag 25522840  T

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Target: chr6; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 52 - 164
Target Start/End: Complemental strand, 24141225 - 24141113
Alignment:
Q  52 acaacaaattgaccggtatcattccacaatatcttgctaatttatcatcccttcaagtcttggatctacaaatgaatagattttatggcgctttgccaag 151  Q
    ||||||| |||||||||||||||||||||| |||| || ||| | ||||||||| ||| ||| |||||||||| || | |||| ||||| ||||||||||    
T  24141225 acaacaatttgaccggtatcattccacaatgtctttctgattcaccatcccttcgagttttgaatctacaaatcaacacatttcatggcactttgccaag 24141126  T
Q  152 taacttctcaaag 164  Q
    |||||| ||||||    
T  24141125 taacttttcaaag 24141113  T

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Target: chr3 (Bit Score: 60; Significance: 9e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 71 - 202
Target Start/End: Complemental strand, 8523483 - 8523352
Alignment:
Q  71 cattccacaatatcttgctaatttatcatcccttcaagtcttggatctacaaatgaatagattttatggcgctttgccaagtaacttctcaaagtacagt 170  Q
    ||||||||||| ||||||||||||||||| |||| |||| ||||||||||||||||| | |||| ||||  |||||||||||||||| |||||  | |||    
T  8523483 cattccacaatgtcttgctaatttatcataccttgaagttttggatctacaaatgaacaaatttcatggaactttgccaagtaacttttcaaaagaaagt 8523384  T
Q  171 gaccttcggagtctgaatctcaatggcaacca 202  Q
    || |||  || |||||||||| ||||||||||    
T  8523383 gaacttgagactctgaatctctatggcaacca 8523352  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 164
Target Start/End: Complemental strand, 11118539 - 11118427
Alignment:
Q  52 acaacaaattgaccggtatcattccacaatatcttgctaatttatcatcccttcaagtcttggatctacaaatgaatagattttatggcgctttgccaag 151  Q
    ||||||| ||||| ||| |||||||||||| ||||||| | | | ||| |||| | || ||| ||||||||||||| | |||| ||||| ||||||| ||    
T  11118539 acaacaatttgactggtgtcattccacaatgtcttgctgaatcaccattcctttatgttttgaatctacaaatgaacaaatttcatggcactttgcctag 11118440  T
Q  152 taacttctcaaag 164  Q
    |||||| ||||||    
T  11118439 taacttttcaaag 11118427  T

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