View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17104_low_5 (Length: 466)

Name: NF17104_low_5
Description: NF17104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17104_low_5
NF17104_low_5
[»] chr1 (27 HSPs)
chr1 (1-449)||(52819644-52820092)
chr1 (129-449)||(11881207-11881527)
chr1 (129-449)||(11890573-11890893)
chr1 (185-449)||(11903707-11903971)
chr1 (1-64)||(52819320-52819383)
chr1 (1-64)||(52819524-52819587)
chr1 (128-201)||(11904708-11904781)
chr1 (129-201)||(11891085-11891157)
chr1 (39-119)||(11904754-11904834)
chr1 (42-115)||(11881901-11881974)
chr1 (42-115)||(11891135-11891208)
chr1 (129-201)||(11881719-11881791)
chr1 (129-201)||(11881851-11881923)
chr1 (128-201)||(11904048-11904121)
chr1 (42-115)||(52819157-52819230)
chr1 (129-201)||(11881587-11881659)
chr1 (1-64)||(52819440-52819503)
chr1 (132-201)||(11890953-11891022)
chr1 (93-190)||(52819364-52819461)
chr1 (117-190)||(52819592-52819665)
chr1 (129-201)||(11904180-11904252)
chr1 (129-201)||(11904312-11904384)
chr1 (129-201)||(11904444-11904516)
chr1 (129-201)||(11904576-11904648)
chr1 (117-187)||(52819268-52819338)
chr1 (54-106)||(11890880-11890932)
chr1 (54-106)||(11903975-11904027)
[»] chr4 (1 HSPs)
chr4 (38-78)||(24420819-24420859)


Alignment Details
Target: chr1 (Bit Score: 433; Significance: 0; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 52819644 - 52820092
Alignment:
Q  1 gaggaggtgacttgtagtagtatgggggtttgtaaacaggtgatggtgggggtggtgacttgtaataatatggaggagaatattgatggacaggtggagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52819644 gaggaggtgacttgtagtagtatgggggtttgtaaacaggtgatggtgggggtggtgacttgtaataatatggaggagaatattgatggacaggtggagg 52819743  T
Q  101 tggtgatgtgtacttataagtaggtgatggtggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgatttgtagtagtaaggagttggt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  52819744 tggtgatgtgtacttataagtaggtgatggtggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgacttgtagtagtaaggagttggt 52819843  T
Q  201 gaaggcttaggtttttcacattcttcataatgcttcttagaagcatacgcgaatggcttagccttgagcacaacttcatacttgtctttagattttacct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52819844 gaaggcttaggtttttcacattcttcataatgcttcttagaagcatatgcgaatggcttagccttgagcacaacttcatacttgtctttagattttacct 52819943  T
Q  301 tcaagtcagttccctcattgagcttagtaggtacgttgaagggagagtctttaggtggagcatatagtttggctttgcacaccacagaaccatattttac 400  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52819944 tcaagtcagttccctcattgagcttagtaggtatgttgaagggagagtctttaggtggagcatatagtttggctttgcacaccacagaaccatattttac 52820043  T
Q  401 atagttaaagtttggaattgtgatggtatactttccattactcttagtt 449  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||    
T  52820044 atagttaaagtttggaattgtgatggcatactttccattactcttagtt 52820092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 129 - 449
Target Start/End: Complemental strand, 11881527 - 11881207
Alignment:
Q  129 ggtggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgatttgtagtagtaaggagttggtgaaggcttaggtttttcacattcttcat 228  Q
    |||||||||||||| |||||| | ||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || ||||||||||       
T  11881527 ggtggaggtggtgagttgtatttgtaaactggtgagggaggtggaggtgatttgtagtagtaaggagttggtgaaggcttaggcttctcacattctttga 11881428  T
Q  229 aatgcttcttagaagcatacgcgaatggcttagccttgagcacaacttcatacttgtctttagattttaccttcaagtcagttccctcattgagcttagt 328  Q
    |||| ||||| |||||||| || ||||||||||||||||||||||| || ||||||||||| ||||| |  | ||| |  ||||| | ||| ||||| ||    
T  11881427 aatgtttctttgaagcataagcaaatggcttagccttgagcacaacctcgtacttgtctttggatttcaagtacaactttgttccttgatttagctttgt 11881328  T
Q  329 aggtacgttgaagggagagtctttaggtggagcatatagtttggctttgcacaccacagaaccatattttacatagttaaagtttggaattgtgatggta 428  Q
    ||||| ||||||||| ||  | |||||||||||||||||    || ||||||||    ||||||||||| ||||||| |||||    || |||||||| |    
T  11881327 aggtatgttgaagggtgaacccttaggtggagcatatagggcagccttgcacactgtcgaaccatatttgacatagtcaaagtccttaactgtgatggca 11881228  T
Q  429 tactttccattactcttagtt 449  Q
    |||||||||||  ||||||||    
T  11881227 tactttccattgttcttagtt 11881207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 129 - 449
Target Start/End: Complemental strand, 11890893 - 11890573
Alignment:
Q  129 ggtggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgatttgtagtagtaaggagttggtgaaggcttaggtttttcacattcttcat 228  Q
    |||||||||||||| || ||  | ||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||| |  || ||||||||||       
T  11890893 ggtggaggtggtgagttatacttgtaaactggtgagggaggtggaggtgatttgtagtagtaaggagttggtgaaggcttggacttctcacattctttga 11890794  T
Q  229 aatgcttcttagaagcatacgcgaatggcttagccttgagcacaacttcatacttgtctttagattttaccttcaagtcagttccctcattgagcttagt 328  Q
    |||| ||||| |||||||| || ||||||||||||||||||||||| || ||||||||||| ||||| |  | |||||  ||||| |  || ||||| ||    
T  11890793 aatgtttctttgaagcataagcaaatggcttagccttgagcacaacctcgtacttgtctttggatttcaagtacaagtttgttccttggtttagctttgt 11890694  T
Q  329 aggtacgttgaagggagagtctttaggtggagcatatagtttggctttgcacaccacagaaccatattttacatagttaaagtttggaattgtgatggta 428  Q
    ||||| ||||||||| ||  | |||||||||||||| ||    || ||||||||    ||||||||||| ||||||| |||||    || |||||||| |    
T  11890693 aggtatgttgaagggtgaacccttaggtggagcataaagggcagccttgcacactgttgaaccatatttgacatagtcaaagtccttaactgtgatggca 11890594  T
Q  429 tactttccattactcttagtt 449  Q
    |||||||||||  ||||||||    
T  11890593 tactttccattgatcttagtt 11890573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 185 - 449
Target Start/End: Complemental strand, 11903971 - 11903707
Alignment:
Q  185 gtagtaaggagttggtgaaggcttaggtttttcacattcttcataatgcttcttagaagcatacgcgaatggcttagccttgagcacaacttcatacttg 284  Q
    |||| |||||||||||||||||||||| || ||||||||||   |||| ||||| |||||||| || ||||||||||||||||||||||| || ||||||    
T  11903971 gtagaaaggagttggtgaaggcttaggcttctcacattctttgaaatgtttctttgaagcataagcaaatggcttagccttgagcacaacctcgtacttg 11903872  T
Q  285 tctttagattttaccttcaagtcagttccctcattgagcttagtaggtacgttgaagggagagtctttaggtggagcatatagtttggctttgcacacca 384  Q
    ||||| ||||| |  | ||| |  ||||| | ||| ||||| ||||||| ||||||||| ||  | |||||||||||||| ||  | || ||||||||      
T  11903871 tctttggatttcaagtacaactttgttccttgatttagctttgtaggtatgttgaagggtgaacccttaggtggagcataaagggtagccttgcacactg 11903772  T
Q  385 cagaaccatattttacatagttaaagtttggaattgtgatggtatactttccattactcttagtt 449  Q
      ||||||||||| ||||||| |||||    || |||||||| ||||||||||||  ||||||||    
T  11903771 tcgaaccatatttgacatagtcaaagtccttaactgtgatggcatactttccattgttcttagtt 11903707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 52819320 - 52819383
Alignment:
Q  1 gaggaggtgacttgtagtagtatgggggtttgtaaacaggtgatggtgggggtggtgacttgta 64  Q
    ||||||||||||||||||| || || |||||||| |||||||||||||||||||||||||||||    
T  52819320 gaggaggtgacttgtagtaatagggtggtttgtatacaggtgatggtgggggtggtgacttgta 52819383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 52819524 - 52819587
Alignment:
Q  1 gaggaggtgacttgtagtagtatgggggtttgtaaacaggtgatggtgggggtggtgacttgta 64  Q
    |||||||||||||||| |||||||||||||| || |||||||||||||||||||| ||||||||    
T  52819524 gaggaggtgacttgtaatagtatgggggtttatacacaggtgatggtgggggtggagacttgta 52819587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 11904781 - 11904708
Alignment:
Q  128 tggtggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgatttgtagtagtaaggagttggtg 201  Q
    ||||||||| ||||| |||||  |||||||||||| |||||| |||||||||||||||||||| ||||||||||    
T  11904781 tggtggaggaggtgagttgtacttataaaccggtgcaggaggtggaggtgatttgtagtagtatggagttggtg 11904708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 11891157 - 11891085
Alignment:
Q  129 ggtggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgatttgtagtagtaaggagttggtg 201  Q
    |||||||||||||| |||||  | ||||||||||  ||||| |||||||||||||||||||||||||||||||    
T  11891157 ggtggaggtggtgagttgtacttgtaaaccggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 11891085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 39 - 119
Target Start/End: Complemental strand, 11904834 - 11904754
Alignment:
Q  39 ggtgatggtgggggtggtgacttgtaataatatggaggagaatattgatggacaggtggaggtggtgatgtgtacttataa 119  Q
    ||||||||||||||||||||||| || || |||||||||||||| | |||||| |||||||| |||||  |||||||||||    
T  11904834 ggtgatggtgggggtggtgacttatagtagtatggaggagaataataatggactggtggaggaggtgagttgtacttataa 11904754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 42 - 115
Target Start/End: Complemental strand, 11881974 - 11881901
Alignment:
Q  42 gatggtgggggtggtgacttgtaataatatggaggagaatattgatggacaggtggaggtggtgatgtgtactt 115  Q
    ||||||||||||||||||||||| || ||||| |||||||| | |||||| ||||||||||||||  |||||||    
T  11881974 gatggtgggggtggtgacttgtagtagtatggtggagaataataatggaccggtggaggtggtgagttgtactt 11881901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 42 - 115
Target Start/End: Complemental strand, 11891208 - 11891135
Alignment:
Q  42 gatggtgggggtggtgacttgtaataatatggaggagaatattgatggacaggtggaggtggtgatgtgtactt 115  Q
    ||||||||||||||||||||||| || ||||| |||||||| | |||||| ||||||||||||||  |||||||    
T  11891208 gatggtgggggtggtgacttgtagtagtatggtggagaataataatggaccggtggaggtggtgagttgtactt 11891135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 11881791 - 11881719
Alignment:
Q  129 ggtggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgatttgtagtagtaaggagttggtg 201  Q
    ||||||||||| || |||||  | ||||||||||  ||||| |||||||||||||||||||||||||||||||    
T  11881791 ggtggaggtggggagttgtacttgtaaaccggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 11881719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 11881923 - 11881851
Alignment:
Q  129 ggtggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgatttgtagtagtaaggagttggtg 201  Q
    |||||||||||||| |||||  | ||||||||||  || || |||||||||||||||||||||||||||||||    
T  11881923 ggtggaggtggtgagttgtacttgtaaaccggtgcgggtggtggaggtgatttgtagtagtaaggagttggtg 11881851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 128 - 201
Target Start/End: Complemental strand, 11904121 - 11904048
Alignment:
Q  128 tggtggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgatttgtagtagtaaggagttggtg 201  Q
    |||||||||||| || |||||  | ||||||||||  || || |||||||||||||||||||||||||||||||    
T  11904121 tggtggaggtggggagttgtacttgtaaaccggtgcgggtggtggaggtgatttgtagtagtaaggagttggtg 11904048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 42 - 115
Target Start/End: Original strand, 52819157 - 52819230
Alignment:
Q  42 gatggtgggggtggtgacttgtaataatatggaggagaatattgatggacaggtggaggtggtgatgtgtactt 115  Q
    |||||||| ||||||||||| || || ||||| |||||||| | |||||||||||||||||||||  |||||||    
T  52819157 gatggtggaggtggtgacttatagtagtatggtggagaataataatggacaggtggaggtggtgacttgtactt 52819230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 11881659 - 11881587
Alignment:
Q  129 ggtggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgatttgtagtagtaaggagttggtg 201  Q
    |||||||| ||||| |||||  | ||||||||||  || || |||||||||||||||||||||||||||||||    
T  11881659 ggtggagggggtgagttgtacttgtaaaccggtgcgggtggtggaggtgatttgtagtagtaaggagttggtg 11881587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 52819440 - 52819503
Alignment:
Q  1 gaggaggtgacttgtagtagtatgggggtttgtaaacaggtgatggtgggggtggtgacttgta 64  Q
    |||| ||||| ||||||||||| ||||||||||| |||||||| ||||| ||||| ||||||||    
T  52819440 gaggtggtgaattgtagtagtacgggggtttgtacacaggtgaaggtggaggtggagacttgta 52819503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 11891022 - 11890953
Alignment:
Q  132 ggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgatttgtagtagtaaggagttggtg 201  Q
    |||||||| || |||||  | ||||| ||||  ||||| |||||||||||||||||||||||||||||||    
T  11891022 ggaggtggggagttgtacttgtaaactggtgcgggaggtggaggtgatttgtagtagtaaggagttggtg 11890953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 93 - 190
Target Start/End: Original strand, 52819364 - 52819461
Alignment:
Q  93 ggtggaggtggtgatgtgtacttataagtaggtgatggtggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgatttgtagtagta 190  Q
    ||||| ||||||||  |||||  ||| || ||||| |||||||||||||| |||||| | ||||| ||||  |||||||| ||||| |||||||||||    
T  52819364 ggtgggggtggtgacttgtacacatatgttggtgacggtggaggtggtgaattgtatttgtaaactggtgttggaggaggtggtgaattgtagtagta 52819461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 117 - 190
Target Start/End: Original strand, 52819592 - 52819665
Alignment:
Q  117 taagtaggtgatggtggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgatttgtagtagta 190  Q
    ||||| |||||||||||||||||||| |||||  | ||||  ||||  |||||||||||||| |||||||||||    
T  52819592 taagttggtgatggtggaggtggtgaattgtacttgtaaattggtgttggaggaggaggtgacttgtagtagta 52819665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 11904252 - 11904180
Alignment:
Q  129 ggtggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgatttgtagtagtaaggagttggtg 201  Q
    ||||||||||| || |||||  | ||||||||||  || || ||||||||||| |||||||||||||||||||    
T  11904252 ggtggaggtggggagttgtacttgtaaaccggtgcgggtggtggaggtgatttatagtagtaaggagttggtg 11904180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 11904384 - 11904312
Alignment:
Q  129 ggtggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgatttgtagtagtaaggagttggtg 201  Q
    ||||||||||| || |||||  | ||||||||||  || || ||||||||||| |||||||||||||||||||    
T  11904384 ggtggaggtggggagttgtacttgtaaaccggtgcgggtggtggaggtgatttatagtagtaaggagttggtg 11904312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 11904516 - 11904444
Alignment:
Q  129 ggtggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgatttgtagtagtaaggagttggtg 201  Q
    ||||||||||| || |||||  | ||||||||||  || || ||||||||||| |||||||||||||||||||    
T  11904516 ggtggaggtggggagttgtacttgtaaaccggtgcgggtggtggaggtgatttatagtagtaaggagttggtg 11904444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 11904648 - 11904576
Alignment:
Q  129 ggtggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgatttgtagtagtaaggagttggtg 201  Q
    ||||||||||| || |||||  | ||||||||||  || || ||||||||||| |||||||||||||||||||    
T  11904648 ggtggaggtggggagttgtacttgtaaaccggtgcgggtggtggaggtgatttatagtagtaaggagttggtg 11904576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 187
Target Start/End: Original strand, 52819268 - 52819338
Alignment:
Q  117 taagtaggtgatggtggaggtggtgacttgtatatataaaccggtgaaggaggaggaggtgatttgtagta 187  Q
    |||| ||||||||| ||||||||||| |||||  | ||||| ||||  |||||||||||||| ||||||||    
T  52819268 taagcaggtgatggcggaggtggtgaattgtacttgtaaactggtgttggaggaggaggtgacttgtagta 52819338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 11890932 - 11890880
Alignment:
Q  54 ggtgacttgtaataatatggaggagaatattgatggacaggtggaggtggtga 106  Q
    ||||||||||| ||||||||||| || || | |||||| ||||||||||||||    
T  11890932 ggtgacttgtagtaatatggaggtgagtaataatggacgggtggaggtggtga 11890880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 106
Target Start/End: Complemental strand, 11904027 - 11903975
Alignment:
Q  54 ggtgacttgtaataatatggaggagaatattgatggacaggtggaggtggtga 106  Q
    ||||||||||| ||||||||||| || || | |||||| ||||||||||||||    
T  11904027 ggtgacttgtagtaatatggaggtgagtaataatggacgggtggaggtggtga 11903975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 24420819 - 24420859
Alignment:
Q  38 aggtgatggtgggggtggtgacttgtaataatatggaggag 78  Q
    |||||||||||||||||| |||||||||  |||||||||||    
T  24420819 aggtgatggtgggggtggggacttgtaaacatatggaggag 24420859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University