View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17104_low_6 (Length: 461)

Name: NF17104_low_6
Description: NF17104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17104_low_6
NF17104_low_6
[»] chr3 (19 HSPs)
chr3 (91-361)||(18149006-18149276)
chr3 (89-361)||(19466373-19466641)
chr3 (89-274)||(19463308-19463495)
chr3 (89-265)||(18117879-18118055)
chr3 (10-58)||(18117674-18117722)
chr3 (180-255)||(19377291-19377366)
chr3 (180-237)||(19426364-19426421)
chr3 (10-58)||(18105446-18105494)
chr3 (305-361)||(18118055-18118111)
chr3 (10-58)||(19463118-19463166)
chr3 (375-421)||(19428974-19429020)
chr3 (372-422)||(19463704-19463754)
chr3 (180-235)||(19355389-19355444)
chr3 (187-266)||(19401440-19401519)
chr3 (187-237)||(19335692-19335742)
chr3 (187-260)||(18017734-18017807)
chr3 (230-269)||(17725789-17725828)
chr3 (230-269)||(19027018-19027057)
chr3 (89-122)||(18105655-18105688)


Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-122; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 91 - 361
Target Start/End: Original strand, 18149006 - 18149276
Alignment:
Q  91 acacattccacaaaatcatgtctagcagcaaatagtggtttataaaaagaaatatccaaacaaagaatagttgatccttttcaacggatttcaatattta 190  Q
    |||||||| |||||||||||||||||||||||||||||||| |||  ||||||||||||||||| |||||||||||||||||||||| ||||||| ||||    
T  18149006 acacattcaacaaaatcatgtctagcagcaaatagtggtttgtaatgagaaatatccaaacaaaaaatagttgatccttttcaacggctttcaatcttta 18149105  T
Q  191 tcaggtgattattaatgtagaagattctgcattttttggcaaatcgtagatataattttccaaactgagcgaatattgtcaacttttgtatgagacgaga 290  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||    
T  18149106 tcaggtgattattaatgtacaagattctgcatttttttgcaaatcgtggatataattttccaaactgagcgaatattgtcaacatttgtatgagacaaga 18149205  T
Q  291 tgagatcatacatgactgtacaactgttgtaatgtttttatacaagttagggaatgaatggattcatgttg 361  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18149206 tgagatcatacatgactgtacaactgttgtaatgtttttatacaagttagggaatgaatggattcatgttg 18149276  T

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Target: chr3; HSP #2
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 89 - 361
Target Start/End: Original strand, 19466373 - 19466641
Alignment:
Q  89 aaacacattccacaaaatcatgtctagcagcaaatagtggtttataaaaagaaatatccaaacaaagaatagttgatccttttcaacggatttcaatatt 188  Q
    |||||| |||||| ||||||||||||||||||||||||||||| |||  |||||||||||||||| |||||||||||| ||||||| || ||||||| ||    
T  19466373 aaacacgttccactaaatcatgtctagcagcaaatagtggtttgtaatgagaaatatccaaacaaggaatagttgatcgttttcaaaggctttcaatctt 19466472  T
Q  189 tatcaggtgattattaatgtagaagattctgcattttttg-gcaaatcgtagatataattttccaaactgagcgaatattgtcaacttttgtatgagacg 287  Q
     |||||||||||||||||   |     ||||||||||||  ||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  19466473 aatcaggtgattattaatcatg-----tctgcattttttttgcaaatcgtggatatagttttccaaactgatcgaatattgtcaacttttgtatgagacg 19466567  T
Q  288 agatgagatcatacatgactgtacaactgttgtaatgtttttatacaagttagggaatgaatggattcatgttg 361  Q
    ||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  19466568 agatgagatcatatatgactgtacaacggttataatgtttttatacaagttagggaatgaatggattcatgttg 19466641  T

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Target: chr3; HSP #3
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 89 - 274
Target Start/End: Original strand, 19463308 - 19463495
Alignment:
Q  89 aaacacattccacaaaatcatgtctagcagcaaatagtggtttataaaaagaaatatccaaacaaagaatagttgatccttttcaacggatttcaatatt 188  Q
    |||||||||||||||||||||||| |||||||||||||| ||| ||   |||||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  19463308 aaacacattccacaaaatcatgtccagcagcaaatagtgatttgtagtgagaaatatccaaacaaagaatagttgatccttttcaacggctttcaatctt 19463407  T
Q  189 tatcaggtgattattaatgtagaagattctgca--ttttttggcaaatcgtagatataattttccaaactgagcgaatattgtcaact 274  Q
     ||||||||||||||||||||||||||||||||  |||||| ||||||| |  |||||||||||||||  ||| ||||||||||||||    
T  19463408 aatcaggtgattattaatgtagaagattctgcatttttttttgcaaatcatgaatataattttccaaatagagtgaatattgtcaact 19463495  T

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Target: chr3; HSP #4
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 89 - 265
Target Start/End: Original strand, 18117879 - 18118055
Alignment:
Q  89 aaacacattccacaaaatcatgtctagcagcaaatagtggtttataaaaagaaatatccaaacaaagaatagttgatccttttcaacggatttcaatatt 188  Q
    ||||||||||||||||||||||| || |||||||||||| ||| |||  ||||||||||||||||||||||||||||||||||||| || ||||||| ||    
T  18117879 aaacacattccacaaaatcatgtttaccagcaaatagtgctttgtaatgagaaatatccaaacaaagaatagttgatccttttcaatggctttcaatctt 18117978  T
Q  189 tatcaggtgattattaatgtagaagattctgcattttttggcaaatcgtagatataattttccaaactgagcgaata 265  Q
     || |||||||||||||||||||||||||||||||| || |||| |||  |||||| ||||| ||||||||| ||||    
T  18117979 aattaggtgattattaatgtagaagattctgcatttctttgcaattcgcggatatagttttcgaaactgagcaaata 18118055  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 18117674 - 18117722
Alignment:
Q  10 ataattctacattatagctaaatcccatatgaaatttgattttcattac 58  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  18117674 ataattttacattatagctaaatcccatatgaaatttgattttcattac 18117722  T

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Target: chr3; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 180 - 255
Target Start/End: Original strand, 19377291 - 19377366
Alignment:
Q  180 ttcaatatttatcaggtgattattaatgtagaagattctgcattttttggcaaatcgtagatataattttccaaac 255  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||  | ||||||| ||||| ||||| |||||    
T  19377291 ttcaatctttatcaggtgattattaatgtggaagattctgcatttttgtgaaaatcgtggatatcattttacaaac 19377366  T

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Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 180 - 237
Target Start/End: Original strand, 19426364 - 19426421
Alignment:
Q  180 ttcaatatttatcaggtgattattaatgtagaagattctgcattttttggcaaatcgt 237  Q
    |||||| |||||||||||||||||||||| |||||||||||||||||  |||||||||    
T  19426364 ttcaatctttatcaggtgattattaatgtggaagattctgcatttttatgcaaatcgt 19426421  T

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Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 18105446 - 18105494
Alignment:
Q  10 ataattctacattatagctaaatcccatatgaaatttgattttcattac 58  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||||    
T  18105446 ataattttacattatagctaaatcccatatgaaattttattttcattac 18105494  T

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Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 305 - 361
Target Start/End: Original strand, 18118055 - 18118111
Alignment:
Q  305 actgtacaactgttgtaatgtttttatacaagttagggaatgaatggattcatgttg 361  Q
    ||||||||||||||| | |||||||||||||||| |||||||||||||| |||||||    
T  18118055 actgtacaactgttggactgtttttatacaagtttgggaatgaatggatacatgttg 18118111  T

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Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 58
Target Start/End: Original strand, 19463118 - 19463166
Alignment:
Q  10 ataattctacattatagctaaatcccatatgaaatttgattttcattac 58  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||||||    
T  19463118 ataattttacattatatctaaatcccatatgaaatttgattttcattac 19463166  T

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Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 375 - 421
Target Start/End: Original strand, 19428974 - 19429020
Alignment:
Q  375 tggcgattttatgaaaatcgtgcatggatataatattccaaacagag 421  Q
    |||||||||||||||||| |||||| |||||||||||||||||||||    
T  19428974 tggcgattttatgaaaattgtgcattgatataatattccaaacagag 19429020  T

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Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 372 - 422
Target Start/End: Original strand, 19463704 - 19463754
Alignment:
Q  372 ctgtggcgattttatgaaaatcgtgcatggatataatattccaaacagagc 422  Q
    |||||| | |||||||||||||||||||||||||||| |||||||||||||    
T  19463704 ctgtggtggttttatgaaaatcgtgcatggatataatcttccaaacagagc 19463754  T

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Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 180 - 235
Target Start/End: Original strand, 19355389 - 19355444
Alignment:
Q  180 ttcaatatttatcaggtgattattaatgtagaagattctgcattttttggcaaatc 235  Q
    |||||| ||||||||||||||||||||||  ||||||||||||||||  |||||||    
T  19355389 ttcaatctttatcaggtgattattaatgtgaaagattctgcatttttatgcaaatc 19355444  T

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Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 187 - 266
Target Start/End: Original strand, 19401440 - 19401519
Alignment:
Q  187 tttatcaggtgattattaatgtagaagattctgcattttttggcaaatcgtagatataattttccaaactgagcgaatat 266  Q
    ||||||||||||||||  |||| |||||| ||||||| ||  ||||||| | ||||||||||||||||| |||| |||||    
T  19401440 tttatcaggtgattatgcatgtggaagatcctgcattgttatgcaaatctttgatataattttccaaacagagccaatat 19401519  T

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Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 19335692 - 19335742
Alignment:
Q  187 tttatcaggtgattattaatgtagaagattctgcattttttggcaaatcgt 237  Q
    |||| ||||||||||||||||| |||||||||||||||||  |||||||||    
T  19335692 tttaccaggtgattattaatgtggaagattctgcatttttatgcaaatcgt 19335742  T

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Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 187 - 260
Target Start/End: Original strand, 18017734 - 18017807
Alignment:
Q  187 tttatcaggtgattattaatgtagaagattctgcattttttggcaaatcgtagatataattttccaaactgagc 260  Q
    ||||||||||||||||  |||| |||||| ||||| | ||| | ||||||| ||||||||||||||||| ||||    
T  18017734 tttatcaggtgattatgtatgtggaagatcctgcactgttttgaaaatcgttgatataattttccaaacagagc 18017807  T

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Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 269
Target Start/End: Complemental strand, 17725828 - 17725789
Alignment:
Q  230 caaatcgtagatataattttccaaactgagcgaatattgt 269  Q
    |||||||| |||||||||||||||||||||| ||||||||    
T  17725828 caaatcgtggatataattttccaaactgagccaatattgt 17725789  T

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Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 230 - 269
Target Start/End: Complemental strand, 19027057 - 19027018
Alignment:
Q  230 caaatcgtagatataattttccaaactgagcgaatattgt 269  Q
    |||||||| |||||||||||||||||||||| ||||||||    
T  19027057 caaatcgtggatataattttccaaactgagccaatattgt 19027018  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 122
Target Start/End: Original strand, 18105655 - 18105688
Alignment:
Q  89 aaacacattccacaaaatcatgtctagcagcaaa 122  Q
    |||||||||||||||||||||||||| |||||||    
T  18105655 aaacacattccacaaaatcatgtctatcagcaaa 18105688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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