View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17104_low_7 (Length: 414)
Name: NF17104_low_7
Description: NF17104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17104_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 10 - 196
Target Start/End: Complemental strand, 21488321 - 21488135
Alignment:
| Q |
10 |
ccacagatacaacaaatattataacaacaaaaccatgtttccttattctatctcttttgttcattttggcatcagaaatatttgtttttgtcttcnnnnn |
109 |
Q |
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| T |
21488321 |
ccacaaatacaacaaatattataacaacaaaaccatgtttccttattctatctcttttgttcattttggcatcagaaatatttgtttttgtctttctttt |
21488222 |
T |
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| Q |
110 |
nnnnnnggtttatttatttacaatttggaagatttattattaacatgataaagggtgaaattcaaagacaaaaacataaagattcat |
196 |
Q |
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| T |
21488221 |
ttttttggtttatttatttacaattgggaagatttattattaacatgataaaaggtgaaattcaaagacagaaacatagagattcat |
21488135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 259 - 377
Target Start/End: Complemental strand, 21488072 - 21487954
Alignment:
| Q |
259 |
ctggaatttcggtttttcctatgaagaaatggcggcaaggaggaagagatggcgatgtatgagggagcaacatttgcttgtatcaaaaaatcaaacaaat |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21488072 |
ctggaatttcggtttttcctatgaagaaatggcggcaaggaggaagagatggcgatgtatgagggagcaacatttgcttgtatcaaaaaatcaaacaaat |
21487973 |
T |
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| Q |
359 |
ttccatcaatgaattatac |
377 |
Q |
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| T |
21487972 |
ttccatcaatgaattatac |
21487954 |
T |
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