View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17104_low_8 (Length: 414)
Name: NF17104_low_8
Description: NF17104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17104_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 179 - 413
Target Start/End: Original strand, 31820740 - 31820974
Alignment:
| Q |
179 |
aactccacaacatcatgcaccctttcaactcactctgactaagaccaacactaaactgaagactttgagatcactccttgcatcgctttcacgtattgtc |
278 |
Q |
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| T |
31820740 |
aactccacaacatcatgcaccctttcaactcactctgactaagaccaacactaaactgaagactttgagatcactccttgcatcgctttcacgtattgtc |
31820839 |
T |
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| Q |
279 |
tgaaaaagatagacttagatattgcaaatggattataggaattaaaaaatatatagaccaataagttggtaatgtgaagaacacaactctccttcaccaa |
378 |
Q |
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| T |
31820840 |
tgaaaaagatagacttagatattgcaaatggattataggaattaaaaaatatatagaccaataagttggtaatgtgaagaacacaactctccttcaccaa |
31820939 |
T |
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| Q |
379 |
cactatattctgtcatattagtttcttcaaagaca |
413 |
Q |
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|||||| |||||||||||||||||||||||||||| |
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| T |
31820940 |
cactattttctgtcatattagtttcttcaaagaca |
31820974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 37 - 182
Target Start/End: Original strand, 31820572 - 31820717
Alignment:
| Q |
37 |
cattccaatataacttttcacactctcgaatatcacttgagatatacatatccggaaaaaataagaagcttatattttctagaatttcataagtatgtga |
136 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31820572 |
cattccaatataacttttcacactctcgaatatcacttgagatatacatatccggaaaaaataagaagcttatattttctagaatttcataagtatgtga |
31820671 |
T |
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| Q |
137 |
tttttcacaaattttggatgcaacctgacactgagagacaagaact |
182 |
Q |
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| T |
31820672 |
tttttcacaaattttggatgcaacctgaaactgaaagacaagaact |
31820717 |
T |
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