View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17104_low_9 (Length: 412)
Name: NF17104_low_9
Description: NF17104
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17104_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 3 - 405
Target Start/End: Original strand, 30710583 - 30710988
Alignment:
| Q |
3 |
cagagaacatgtatggcaattacaattcaaaagcaagcgatcagggtgttttttctgaaaaagaaacagaaaatggagtgaagtcagaggaatcagctca |
102 |
Q |
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| T |
30710583 |
cagagaacatgtatggcaattacaattcaaaagtacgcgatcagagtgttttttctgaaaaagaaacagaaaatggagcgaaggcagaggaatcagctca |
30710682 |
T |
|
| Q |
103 |
tagccttagtggtaacttactagtttttatcaaacaaaattttcttgtctttacaattttgggtaaatgtaaattggaagttgctggtttaggtttgaag |
202 |
Q |
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| T |
30710683 |
tagcctcagtggtaacttactagttcttatccaacaaaattttcctgtctttacaattttgggtaaatataaattggaagttgctggtttaggtttgaaa |
30710782 |
T |
|
| Q |
203 |
ttggcaattattctacaagtggttctagttgcttttctggtatttctatggagtttccgttgctacaccagatataggaggaggcgttcccgctgaatta |
302 |
Q |
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| T |
30710783 |
ttggcaattattctacaagtggttgtagttgcttttctggtatttctatggagtttccgttgctacaccagatataggaggaggcgttcccgctgaatta |
30710882 |
T |
|
| Q |
303 |
aaagagaccttggtgtttacatgattttgaactgtggtaatattttaaatatattcttcattctccctttgtcagttctacttg---attgtgaattgat |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||| ||| ||||||||| |
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| T |
30710883 |
aaagagaccttggtgtttacatgattttgaactgtggtaatattttaaatatattcttcattctccctttctcagttcttcttgattattatgaattgat |
30710982 |
T |
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| Q |
400 |
gatgtc |
405 |
Q |
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| T |
30710983 |
gatgtc |
30710988 |
T |
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