View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17105_low_4 (Length: 239)
Name: NF17105_low_4
Description: NF17105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17105_low_4 |
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| [»] scaffold0011 (2 HSPs) |
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Alignment Details
Target: scaffold0011 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 12 - 218
Target Start/End: Original strand, 186088 - 186295
Alignment:
| Q |
12 |
catttatttttcctcatttatgtccaacatgatttaattcacattaacttaactcatgttaaatatagatctacataactgaattaacgttcggcttttt |
111 |
Q |
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| T |
186088 |
catttgtttttcctcatttatgtccaacatgatttaattcacattatgttaactcatgttaaatatagatctacataaattaattaacgttcggcttttt |
186187 |
T |
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| Q |
112 |
tacgggaacaagcaattttaaattaaatgggagaacaacaattc-ttgactaagtataaaaccccatgtgggtgaacatctttattgcgaggacgatgta |
210 |
Q |
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| T |
186188 |
tacgggaacatgcaattttaaattaaatggaagaacaacaattctttgactaagtataaaaccccatgtgggtcaaaatctttattgcgaggacgatgta |
186287 |
T |
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| Q |
211 |
tagacagt |
218 |
Q |
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|||||||| |
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| T |
186288 |
tagacagt |
186295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 12 - 218
Target Start/End: Original strand, 223893 - 224099
Alignment:
| Q |
12 |
catttatttttcctcatttatgtccaacatgatttaattcacattaacttaactcatgttaaatatagatctacataactgaattaacgttcggcttttt |
111 |
Q |
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||||| ||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
223893 |
catttgtttttccacatttatgtccaacgtgatttaattcacattaagttaactcatgttaaatatagatctacataacttaattaacgtttggcttttt |
223992 |
T |
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| Q |
112 |
tacgggaacaagcaattttaaattaaatgggagaacaacaattcttgactaagtataaaaccccatgtgggtgaacatctttattgcgaggacgatgtat |
211 |
Q |
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| | | |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
223993 |
tccagaaacatgcaattttaaattaaatgggcgaacaacaattcttgactaagtataaaaccccatgtgggtcaacatctttattgcgaggacgatgtat |
224092 |
T |
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| Q |
212 |
agacagt |
218 |
Q |
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||||||| |
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| T |
224093 |
agacagt |
224099 |
T |
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