View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17105_low_6 (Length: 221)
Name: NF17105_low_6
Description: NF17105
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17105_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 19 - 197
Target Start/End: Complemental strand, 32555559 - 32555384
Alignment:
| Q |
19 |
catcattctttgcaaatcttcctctaactcgaggtctgctatcagccagagttttgcggcatgcatactgcatatttggttgcatcatcattagatgaac |
118 |
Q |
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| T |
32555559 |
catcattctttgcaaatcttcctctaactcgaggtctgctatcagccagagttttgcggcatgcatactgcatatttggttgcatcatcattagatgaac |
32555460 |
T |
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| Q |
119 |
ttcaaaatatgcagtaagaagagaagtggcttgatatgcaagtaattatagcttgcaaatttatatgtaacattataag |
197 |
Q |
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| T |
32555459 |
ttcaaaatatgcagt---aagagaagtggcttgatatgcaagtaattatagcttgcaaatttatatgtaacatgataag |
32555384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 16922811 - 16922740
Alignment:
| Q |
19 |
catcattctttgcaaatcttcctctaactcgaggtctgctatcagccagagttttgcggcatgcatactgca |
90 |
Q |
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|||||||||||||||| |||||||||||||| || | |||||| || | |||||| || || |||||||||| |
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| T |
16922811 |
catcattctttgcaaaccttcctctaactcgcggccggctatccgctaaagtttttcgacaagcatactgca |
16922740 |
T |
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