View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17106_high_15 (Length: 262)

Name: NF17106_high_15
Description: NF17106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17106_high_15
NF17106_high_15
[»] chr1 (2 HSPs)
chr1 (43-262)||(10416799-10417018)
chr1 (46-262)||(10411079-10411295)
[»] chr5 (4 HSPs)
chr5 (46-262)||(35375268-35375484)
chr5 (58-262)||(35405466-35405670)
chr5 (59-262)||(35753692-35753895)
chr5 (60-184)||(35435889-35436013)
[»] chr2 (4 HSPs)
chr2 (46-256)||(30661884-30662094)
chr2 (46-256)||(30634155-30634365)
chr2 (39-249)||(30670557-30670767)
chr2 (133-186)||(30659873-30659926)
[»] chr8 (1 HSPs)
chr8 (50-198)||(13564231-13564378)
[»] chr7 (1 HSPs)
chr7 (60-186)||(29624309-29624435)
[»] chr3 (1 HSPs)
chr3 (60-104)||(1153578-1153622)


Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 43 - 262
Target Start/End: Complemental strand, 10417018 - 10416799
Alignment:
Q  43 ttccttcatatggagaataatcaaatatatggagtgatacctgaaacaattgggcaactaattggtttaaatttcttacaaattgaagacaatttatttg 142  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10417018 ttccttcatatggagaataatcaaatatatggagtgatacctgaaacaattgggcaactaattggtttaaatttcttacaaattgcagacaatttatttg 10416919  T
Q  143 agggaacaattcctgatacaattggaaagcttaagaatctaggaatattgggcttggggagtaacaaattctccggtaatattcctatagtcattggcaa 242  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  10416918 agggaacaattcctgattcaattggaaagcttaagaatctaggaatattgggcttggagagtaacgaattctccggtaatattcctatagtcattggcaa 10416819  T
Q  243 tcttactgtgttgtctgaac 262  Q
    ||||||||||||||||||||    
T  10416818 tcttactgtgttgtctgaac 10416799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 46 - 262
Target Start/End: Complemental strand, 10411295 - 10411079
Alignment:
Q  46 cttcatatggagaataatcaaatatatggagtgatacctgaaacaattgggcaactaattggtttaaatttcttacaaattgaagacaatttatttgagg 145  Q
    |||||||||||  ||||||||||||||||||||||||| |||| |||||| ||||| |||||||||| | ||||| | ||||   ||||||   |||| |    
T  10411295 cttcatatggaatataatcaaatatatggagtgataccagaaagaattggacaactgattggtttaactgtcttaaatattgctaacaattcccttgatg 10411196  T
Q  146 gaacaattcctgatacaattggaaagcttaagaatctaggaatattgggcttggggagtaacaaattctccggtaatattcctatagtcattggcaatct 245  Q
    ||||||||||  || |||||||||| |||||||||||||||  ||||  ||||| |  |||||||||||| ||||| |||||||||||  ||||||||||    
T  10411195 gaacaattccatattcaattggaaatcttaagaatctaggagaattgtacttggagtataacaaattctcaggtaacattcctatagtacttggcaatct 10411096  T
Q  246 tactgtgttgtctgaac 262  Q
     ||| ||||||| ||||    
T  10411095 aactttgttgtcggaac 10411079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 46 - 262
Target Start/End: Original strand, 35375268 - 35375484
Alignment:
Q  46 cttcatatggagaataatcaaatatatggagtgatacctgaaacaattgggcaactaattggtttaaatttcttacaaattgaagacaatttatttgagg 145  Q
    ||||||||||||  |||||||||| ||||||||||||||||||||||||| |||||||| | |||||   ||||  |||||  | |||||||||||||||    
T  35375268 cttcatatggagtctaatcaaatacatggagtgatacctgaaacaattggacaactaatcgatttaacagtcttggaaatttcaaacaatttatttgagg 35375367  T
Q  146 gaacaattcctgatacaattggaaagcttaagaatctaggaatattgggcttggggagtaacaaattctccggtaatattcctatagtcattggcaatct 245  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||   |||||||||| || ||||| |||||||||||||||||||||||    
T  35375368 gaacaattcctgaatcaattggaaagcttaagaatctaggaatattgggcttggatggtaacaaattatctggtaaaattcctatagtcattggcaatct 35375467  T
Q  246 tactgtgttgtctgaac 262  Q
    ||| || ||||||||||    
T  35375468 tacagtcttgtctgaac 35375484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 58 - 262
Target Start/End: Original strand, 35405466 - 35405670
Alignment:
Q  58 aataatcaaatatatggagtgatacctgaaacaattgggcaactaattggtttaaatttcttacaaattgaagacaatttatttgagggaacaattcctg 157  Q
    |||||| ||||||||||||||||||| |||| |||||  |||||||| ||||||| |  ||||   |||| | ||||||| ||||||||||||||||| |    
T  35405466 aataataaaatatatggagtgataccggaaagaattgaacaactaatcggtttaattgacttaaccattggatacaatttctttgagggaacaattccag 35405565  T
Q  158 atacaattggaaagcttaagaatctaggaatattgggcttggggagtaacaaattctccggtaatattcctatagtcattggcaatcttactgtgttgtc 257  Q
    || |||||||||||||||| ||| | ||||||||||||||||   |||||||||| |||||||| ||||| ||| ||||||||||||||||| |||||||    
T  35405566 attcaattggaaagcttaaaaatttgggaatattgggcttggatggtaacaaattatccggtaacattccaataatcattggcaatcttactttgttgtc 35405665  T
Q  258 tgaac 262  Q
    |||||    
T  35405666 tgaac 35405670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 59 - 262
Target Start/End: Original strand, 35753692 - 35753895
Alignment:
Q  59 ataatcaaatatatggagtgatacctgaaacaattgggcaactaattggtttaaatttcttacaaattgaagacaatttatttgagggaacaattcctga 158  Q
    |||||||||||||||| | |||||||| ||||||||| ||||||| |||||||  ||||||| | ||||   |||||||  |||||||| |||||||  |    
T  35753692 ataatcaaatatatggggagatacctggaacaattggacaactaactggtttatctttcttagatattgggtacaatttccttgagggaccaattccaaa 35753791  T
Q  159 tacaattggaaagcttaagaatctaggaatattgggcttggggagtaacaaattctccggtaatattccta-tagtcattggcaatcttactgtgttgtc 257  Q
    | |||||||||||||||| ||||||| || |||||  |||   | ||||||||| ||| || |||| |||| |||| ||||| ||||||||| | |||||    
T  35753792 ttcaattggaaagcttaaaaatctagtaagattggtattgcaaaataacaaattttccagttatatacctactagt-attggaaatcttactatcttgtc 35753890  T
Q  258 tgaac 262  Q
    |||||    
T  35753891 tgaac 35753895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 184
Target Start/End: Original strand, 35435889 - 35436013
Alignment:
Q  60 taatcaaatatatggagtgatacctgaaacaattgggcaactaattggtttaaatttcttacaaattgaagacaatttatttgagggaacaattcctgat 159  Q
    |||||||||||||||||  || ||||||| |||||| |||||||||||||||| |  |||  | ||    || |||||  | |||||||||||||| |||    
T  35435889 taatcaaatatatggagaaatccctgaaagaattggacaactaattggtttaactcactttgatatgatggagaatttcctagagggaacaattccagat 35435988  T
Q  160 acaattggaaagcttaagaatctag 184  Q
     ||||||||||||||| ||||||||    
T  35435989 tcaattggaaagcttacgaatctag 35436013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 46 - 256
Target Start/End: Original strand, 30661884 - 30662094
Alignment:
Q  46 cttcatatggagaataatcaaatatatggagtgatacctgaaacaattgggcaactaattggtttaaatttcttacaaattgaagacaatttatttgagg 145  Q
    ||||| ||||||  |||| |||||||||||||||| ||  |||||||||| |||||||||||||||  |  |||| |  ||||  |||||||  ||||||    
T  30661884 cttcacatggagtctaataaaatatatggagtgatcccgaaaacaattggacaactaattggtttagttgccttagattttgataacaatttccttgagg 30661983  T
Q  146 gaacaattcctgatacaattggaaagcttaagaatctaggaatattgggcttggggagtaacaaattctccggtaatattcctatagtcattggcaatct 245  Q
    |||||||||| ||| ||||||||||||||||||||||||||  | ||| |||||   ||||||||||| ||||||| |||||  ||||||||||||||||    
T  30661984 gaacaattccagattcaattggaaagcttaagaatctaggaggaatggccttggctggtaacaaattcaccggtaacattccattagtcattggcaatct 30662083  T
Q  246 tactgtgttgt 256  Q
    |||| ||||||    
T  30662084 tactttgttgt 30662094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 46 - 256
Target Start/End: Original strand, 30634155 - 30634365
Alignment:
Q  46 cttcatatggagaataatcaaatatatggagtgatacctgaaacaattgggcaactaattggtttaaatttcttacaaattgaagacaatttatttgagg 145  Q
    ||||| ||||||  |||| |||||||||||||||| ||  |||||||||| |||||||||||||||  |  ||||   |||   || |||||| ||||||    
T  30634155 cttcacatggagtctaataaaatatatggagtgatcccgaaaacaattggacaactaattggtttagttgccttaaccattagtgataatttacttgagg 30634254  T
Q  146 gaacaattcctgatacaattggaaagcttaagaatctaggaatattgggcttggggagtaacaaattctccggtaatattcctatagtcattggcaatct 245  Q
    |||||||||| ||| ||||||||||||||||||||||||||  |||||  ||||  | ||||||||||  |||||| |||||  ||||||||||||||||    
T  30634255 gaacaattccagattcaattggaaagcttaagaatctaggatcattggctttggataataacaaattcatcggtaacattccattagtcattggcaatct 30634354  T
Q  246 tactgtgttgt 256  Q
    |||| ||||||    
T  30634355 tactttgttgt 30634365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 39 - 249
Target Start/End: Original strand, 30670557 - 30670767
Alignment:
Q  39 tcaattccttcatatggagaataatcaaatatatggagtgatacctgaaacaattgggcaactaattggtttaaatttcttacaaattgaagacaattta 138  Q
    |||||| |||||||||||| |||||||||||||||||||||| ||  |||||||||| |||||||||||||||  |  ||||   |||    | ||||||    
T  30670557 tcaatttcttcatatggagtataatcaaatatatggagtgatcccgaaaacaattggacaactaattggtttagttgccttaaccattagttataattta 30670656  T
Q  139 tttgagggaacaattcctgatacaattggaaagcttaagaatctaggaatattgggcttggggagtaacaaattctccggtaatattcctatagtcattg 238  Q
     |||||||| ||||||| ||| ||||||||||||||||||||||||||  |||||  ||||    ||||||||||  |||||| |||||  |||||||||    
T  30670657 cttgagggagcaattccagattcaattggaaagcttaagaatctaggatcattggctttggatgataacaaattcatcggtaacattccattagtcattg 30670756  T
Q  239 gcaatcttact 249  Q
    |||||||||||    
T  30670757 gcaatcttact 30670767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 30659873 - 30659926
Alignment:
Q  133 aatttatttgagggaacaattcctgatacaattggaaagcttaagaatctagga 186  Q
    |||||| |||||||||||||||| |||  || ||||||||||||||||||||||    
T  30659873 aatttacttgagggaacaattccagatttaactggaaagcttaagaatctagga 30659926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 50 - 198
Target Start/End: Original strand, 13564231 - 13564378
Alignment:
Q  50 atatggagaataatcaaatatatggagtgatacctgaaacaattgggcaactaattggtttaaatttcttacaaattgaagacaatttatttgagggaac 149  Q
    |||||| | |||||||||||||||||||||||||  ||| ||| || |||||||| ||||||| || |||| | |||| | |||||||  ||||||||||    
T  13564231 atatggggcataatcaaatatatggagtgatacca-aaagaataggtcaactaatcggtttaacttccttaaagattggaaacaatttccttgagggaac 13564329  T
Q  150 aattcctgatacaattggaaagcttaagaatctaggaatattgggcttg 198  Q
    |||||| ||| ||||||||| |||||||||||||| || ||||| ||||    
T  13564330 aattccagattcaattggaatgcttaagaatctagtaaaattggtcttg 13564378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 186
Target Start/End: Complemental strand, 29624435 - 29624309
Alignment:
Q  60 taatcaaatatatggagtgatacctgaaacaattgggcaactaattggtttaaatttcttacaaattgaagacaatttatttgagggaacaattcctgat 159  Q
    |||||||||||||||||| |||||||||| ||||||  |||||||   ||||| || |||| | || |   ||||||   ||||||||||||| ||  ||    
T  29624435 taatcaaatatatggagtcatacctgaaagaattggagaactaatcaatttaacttacttaaacatcggcaacaattaccttgagggaacaataccatat 29624336  T
Q  160 acaattggaaagcttaagaatctagga 186  Q
     ||||||||||||||||||||||||||    
T  29624335 tcaattggaaagcttaagaatctagga 29624309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 1153578 - 1153622
Alignment:
Q  60 taatcaaatatatggagtgatacctgaaacaattgggcaactaat 104  Q
    |||||||||||||||||||||||| |||| |||||| ||||||||    
T  1153578 taatcaaatatatggagtgataccagaaagaattggacaactaat 1153622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University