View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17106_high_4 (Length: 487)
Name: NF17106_high_4
Description: NF17106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17106_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 173; Significance: 8e-93; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 173; E-Value: 8e-93
Query Start/End: Original strand, 274 - 470
Target Start/End: Complemental strand, 10330421 - 10330226
Alignment:
| Q |
274 |
catcacctctcatactgctaaaaatattcttccaccaaatcgaatttgtgatgctctctctaaccacttccctaattagaagcccatgtttatgagccga |
373 |
Q |
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| T |
10330421 |
catcacctctcataattctaaaaatattcttccaccaaattgaatttgtgatgctctctctaaccacttccctaattagaagcccatgtttatgagccga |
10330322 |
T |
|
| Q |
374 |
aaggtgacaccaaaactcatctttctccctccttaacctccaacaccacttccttaaaagagccaaattaaaaacttgtaaactcccccaccttcct |
470 |
Q |
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| T |
10330321 |
aaggtgacaccaaaactcatctttctccctccttaacctccaacaccacttccttaaaagagccaaataaaaaacttgtaaact-ccccaccttcct |
10330226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 10330524 - 10330419
Alignment:
| Q |
1 |
aaatgttacacaataaaaccctacactccaccaattcaacctcacaaacaaacaaatttcttctccaaagctaacaagccccctcaacaccaatacctaa |
100 |
Q |
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| T |
10330524 |
aaatattagacaataaaaccctacactccaccaattcaacctcacaaacaaacaaatttcttctccaaagctaacaagccccctcaacaccaatacctaa |
10330425 |
T |
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| Q |
101 |
ctacat |
106 |
Q |
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|||||| |
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| T |
10330424 |
ctacat |
10330419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 382 - 455
Target Start/End: Original strand, 35518280 - 35518353
Alignment:
| Q |
382 |
accaaaactcatctttctccctccttaacctccaacaccacttccttaaaagagccaaattaaaaacttgtaaa |
455 |
Q |
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| T |
35518280 |
accaaaatccatcattctccctccttaacatccaacaccacttccctaaaatatgtaaattaaaaacttttaaa |
35518353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 381 - 455
Target Start/End: Complemental strand, 53653679 - 53653605
Alignment:
| Q |
381 |
caccaaaactcatctttctccctccttaacctccaacaccacttccttaaaagagccaaattaaaaacttgtaaa |
455 |
Q |
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| T |
53653679 |
caccaaaactcacatttctccctctttaatctccaacaccacttatctaaaagagctaaattaaaaacttttaaa |
53653605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 380 - 428
Target Start/End: Complemental strand, 24781233 - 24781185
Alignment:
| Q |
380 |
acaccaaaactcatctttctccctccttaacctccaacaccacttcctt |
428 |
Q |
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| T |
24781233 |
acaccaaaactcatctttctcattccttaacctcttacaccacttcctt |
24781185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 237
Target Start/End: Complemental strand, 24781448 - 24781379
Alignment:
| Q |
168 |
tttaccacctccccatctagccacgactcgtgtgaaaacaacgtcttactaccattttctattttattaa |
237 |
Q |
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||||||||||||||| ||||||||||||| || | |||||| | |||||||||||||||||| |||| |
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| T |
24781448 |
tttaccacctccccacctagccacgactcatgccaggacaacgcttcactaccattttctattttcttaa |
24781379 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 396 - 450
Target Start/End: Original strand, 13465995 - 13466049
Alignment:
| Q |
396 |
ttctccctccttaacctccaacaccacttccttaaaagagccaaattaaaaactt |
450 |
Q |
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| T |
13465995 |
ttctcactctttaacctccaacaccacttccctaaaatggctaaattaaaaactt |
13466049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 175 - 284
Target Start/End: Original strand, 28827249 - 28827358
Alignment:
| Q |
175 |
cctccccatctagccacgactcgtgtgaaaacaacgtcttactaccattttctattttattaataacattatacacaaatcatctccctccacttatctc |
274 |
Q |
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||||| |||||| | ||||| |||| ||||||| || ||| ||| |||| ||||||| ||| ||||||||| || ||| |||||||||||| | | ||| |
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| T |
28827249 |
cctcctcatctaacaacgacacgtgccaaaacaaagtattagtacaatttcctattttcttagtaacattatccaaaaaccatctccctccattcacctc |
28827348 |
T |
|
| Q |
275 |
atcacctctc |
284 |
Q |
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||||||||| |
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| T |
28827349 |
gtcacctctc |
28827358 |
T |
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