View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17106_high_6 (Length: 416)
Name: NF17106_high_6
Description: NF17106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17106_high_6 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 18 - 416
Target Start/End: Complemental strand, 29147130 - 29146730
Alignment:
| Q |
18 |
ccacaaatgtatccacctctttgataaaatacttgttcttaaagcttcatcaatggaaagataagagattatgcgatgcaaaatatcatcaggtagttca |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29147130 |
ccacaaatgtatccacctctttgataaaatacttgttcttaaagcttcatcaatggaaagataagagattaagcgatgcaaaatatcatcaggtagttca |
29147031 |
T |
|
| Q |
118 |
cttacaaggtctttaaatttgtaactccttcttcttcttaccatctttgttcttggttttgacctagttttcatctgcaaaaggaataaacaaaattcta |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29147030 |
cttacaaggtctttaaatttgtaactccttcttcttcttaccatctttgttcttggttttgacctagttttcatctgcaaaaggaataaacaaaattcta |
29146931 |
T |
|
| Q |
218 |
agagatggtgaaattcttgtgcaagagaggttttgatattaatgtattcgatataataacaggttagatttgtgtaccttatgtcaaacgttgacgggc- |
316 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29146930 |
agagatggtgaaattcttgtgtaagagaggttttgatattaatgtattcgatataataacaggttagatttgtgtaccttatgtcaaacgttgacgggct |
29146831 |
T |
|
| Q |
317 |
-tacgaccggaaactctcaaacaaaacctgacggcaaaattaattgtatatactaggaannnnnnngaaggatatactagggttagattaaataatattt |
415 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
29146830 |
atacgactggaaactctcaaacaaaacctgacggcaaaattaattgtatacactaggttttttttttaaggatatactagggttagattaaataatattt |
29146731 |
T |
|
| Q |
416 |
t |
416 |
Q |
| |
|
| |
|
|
| T |
29146730 |
t |
29146730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 40 - 107
Target Start/End: Original strand, 6953910 - 6953977
Alignment:
| Q |
40 |
gataaaatacttgttcttaaagcttcatcaatggaaagataagagattatgcgatgcaaaatatcatc |
107 |
Q |
| |
|
|||||||| |||||||| ||| | |||||||| ||||||||||| ||||||| ||| |||||||||| |
|
|
| T |
6953910 |
gataaaatgcttgttctaaaaacatcatcaatagaaagataagatattatgcaatgttaaatatcatc |
6953977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University