View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17106_high_7 (Length: 414)
Name: NF17106_high_7
Description: NF17106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17106_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 9 - 394
Target Start/End: Complemental strand, 1880696 - 1880311
Alignment:
| Q |
9 |
tcacccaaaaaatagtatacgtgtaacttattttgaaggagtatacgtgtaacttttatgatctcaattctcaccaacattacaactaaaatttgagaga |
108 |
Q |
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| T |
1880696 |
tcacccaaaaaatagtatacgtgtaacttattttgaaggagtatacgtgtaacttttatgatctcaattctcaccaacattacaactaaaatttgagaga |
1880597 |
T |
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| Q |
109 |
aagaacaaaattaaaagttctgacaaaacaaaagatgctaggcaatgaaaatatacaaagaaattgtcacaataataaaaggttagaacatcatctataa |
208 |
Q |
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| T |
1880596 |
aagaacaaaattaaaagttctgacaaaacaaaaggtgctaggcaatgaaaatatacaaagaaattgtcacaataataaaaggttagaacatcatctataa |
1880497 |
T |
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| Q |
209 |
ttggaaagttaaaacagaattgagagatgnnnnnnnnnntgaaacattttcttattagcaattgaataagaattaatgtgaaaccatgcagggaactctc |
308 |
Q |
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| T |
1880496 |
ttggaaagttaaaacagaattgagagatgaaaaaaaaaatgaaacattttcttattagcaattgaataagaattaatgtgaaaccatgcagggaactctc |
1880397 |
T |
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| Q |
309 |
ttcctgctaaataacatatagccgaacatattattcctaccgaagaacttaaatgcatgtttgaattgaccgtgaatttttcagaa |
394 |
Q |
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| T |
1880396 |
ttcctgctaaataacatatagccgaacatattattcctacggaagaacttaaatgcatgtttggattgaccgcgaatttttcagaa |
1880311 |
T |
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