View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17106_low_1 (Length: 568)
Name: NF17106_low_1
Description: NF17106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17106_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 7 - 554
Target Start/End: Original strand, 48087243 - 48087798
Alignment:
| Q |
7 |
gtgatatgaatggagtaattgacaccactttcaaaatttaaagtgacgcttattttaggataaattttattcttttaaatatgtcaattattttgggatg |
106 |
Q |
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| T |
48087243 |
gtgagatgaagggagtaattgacaccactttcaaaatttaaagtgacgcttattttaggatgaattttattcttttaaatatgtcaattattttgggatg |
48087342 |
T |
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| Q |
107 |
ggagaaatactatactctctcgtcacattataactg-------tttcatttgcaatatttttatatctcaagttattatatttttcttcgtgattggata |
199 |
Q |
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| T |
48087343 |
ggagaaataatatactctctcgtcacattataatttataagtatttcatttgcaatatttttatatctcaagttattatatttttcttcgtgattggata |
48087442 |
T |
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| Q |
200 |
ttttctacatgcaactgcaaaaaccaatctctcaaaccgagtaggaccacaacgaccggcaaaactctccatttgaaaaactaatgcagagatttagtct |
299 |
Q |
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| T |
48087443 |
atttctacatgcaactgcaaaaatcaatctctcaaaccgagtaggaccacaacgatcggcaaaactctccatttgaaaaactaatgcagagatttagtct |
48087542 |
T |
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| Q |
300 |
tgcacattataatgtgataaaa-aattggttctctcataaaacaattcttataataagtccataaacagaggtctccaccatttctggaaagtttctaaa |
398 |
Q |
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| T |
48087543 |
tgcacattataacgtgataaaaaaattggttctctcataaaacaattcttataataagtccataaacagaggtctccaccatttctggaaagtttctaaa |
48087642 |
T |
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| Q |
399 |
aggtaggcatgcatcttggtaagtttcaagtctcaacacaccaaaagtgagtacatcaaacttccacatagttagctctattggtaaattgagaagcatt |
498 |
Q |
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| T |
48087643 |
aggtaggcatgcatctaggtaagtttcaagtctcaacacaccaaaagtgagtacatcaaacttccacatagttagctctattggtaaattgagaagcatt |
48087742 |
T |
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| Q |
499 |
gaaggagttttaagaacgagtttaatgttcaaattctaaaaactaacataattcct |
554 |
Q |
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| T |
48087743 |
gaaggagttttaagaacgagtttaatgttcaaattctaaaaactaacataattcct |
48087798 |
T |
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