View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17106_low_10 (Length: 323)
Name: NF17106_low_10
Description: NF17106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17106_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 36170462 - 36170764
Alignment:
| Q |
1 |
aattcaggtgaattcaatagggttcattcagaatattgcctttggagatgagttggttaggcaaacggtgattagagaaggcggaatccgtgctttgtta |
100 |
Q |
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| T |
36170462 |
aattcaggtgaattcaatagggttcattcagaatattgcctttggagatgagttggttaggcaaatggtgattagagaaggcggaatccgtgctttgtta |
36170561 |
T |
|
| Q |
101 |
cgtgttttagatccgaaatggtcatattcttcaaaaacaaaggaaataacaatgagggctattgaaagtttgtgttttacttcatctagctctgtaagta |
200 |
Q |
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| T |
36170562 |
cgtgttttagatccgaaatggtcatattcttcaaaaacaaaggaaataacaatgagggctattgaaagtttgtgttttacttcatctagctctgtaagta |
36170661 |
T |
|
| Q |
201 |
ttttaatgagttatggttttgtggatcagttgctatattatgttcgacacggtgaagtttcgattcaagagttggctttgaaagtggcatttagattatc |
300 |
Q |
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| T |
36170662 |
ttttaatgagttatggttttgtggatcagttgctatattatgttcgacacggtgaagtttcgattcaagagttagctttgaaagtggcatttagattatc |
36170761 |
T |
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| Q |
301 |
tgg |
303 |
Q |
| |
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||| |
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| T |
36170762 |
tgg |
36170764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 187 - 303
Target Start/End: Complemental strand, 1286394 - 1286278
Alignment:
| Q |
187 |
tagctctgtaagtattttaatgagttatggttttgtggatcagttgctatattatgttcgacacggtgaagtttcgattcaagagttggctttgaaagtg |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1286394 |
tagctctgtaagtattttaatgagttatggttttgtggatcagttgctatattatgttcgacacggtgaagtttcgattcaagagttggctttgaaagtg |
1286295 |
T |
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| Q |
287 |
gcatttagattatctgg |
303 |
Q |
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| T |
1286294 |
gcatttagattatctgg |
1286278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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