View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17106_low_18 (Length: 224)

Name: NF17106_low_18
Description: NF17106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17106_low_18
NF17106_low_18
[»] chr4 (3 HSPs)
chr4 (1-219)||(29146357-29146579)
chr4 (125-211)||(7678054-7678142)
chr4 (125-219)||(4060891-4060985)
[»] chr3 (3 HSPs)
chr3 (125-215)||(37317973-37318063)
chr3 (141-215)||(38889200-38889274)
chr3 (174-218)||(44806062-44806106)
[»] chr2 (4 HSPs)
chr2 (125-219)||(19076751-19076845)
chr2 (150-219)||(6457008-6457077)
chr2 (174-218)||(43792921-43792965)
chr2 (172-219)||(6213596-6213641)
[»] chr1 (3 HSPs)
chr1 (125-215)||(51051474-51051564)
chr1 (150-215)||(37214051-37214116)
chr1 (181-218)||(47335075-47335112)
[»] chr5 (3 HSPs)
chr5 (126-213)||(5245932-5246018)
chr5 (128-216)||(12602057-12602143)
chr5 (172-219)||(27511592-27511639)
[»] chr6 (1 HSPs)
chr6 (173-219)||(29927829-29927874)
[»] chr8 (2 HSPs)
chr8 (125-212)||(5798297-5798384)
chr8 (157-224)||(36987953-36988017)
[»] chr7 (1 HSPs)
chr7 (146-204)||(7441681-7441739)
[»] scaffold0632 (1 HSPs)
scaffold0632 (125-197)||(3411-3483)


Alignment Details
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 29146357 - 29146579
Alignment:
Q  1 ttttctatggcatgtggcctagtctgatttgtcaattcaatcacacca-----tttaatacttagtcaacnnnnnnnnnntcataccattttttaaggnn 95  Q
    ||||||||||||||||||||||||| ||||||||||| ||||||||||     ||||| |||||||||||          ||||||||||||| ||||      
T  29146357 ttttctatggcatgtggcctagtctcatttgtcaatttaatcacaccacaccatttaagacttagtcaacaaaaaaaa--tcataccatttttgaaggaa 29146454  T
Q  96 nnnnnntcataccattaatgatt---atttgtgagaaagtcttacacggtcacaaatttttgggcacactatttaagcgcacacacataaaaatacattt 192  Q
          |||||||||||||||||   |||||| ||||||||||||| ||||||||  |||||||||||||||||| ||  ||||| ||||||||||||||    
T  29146455 aaaaaatcataccattaatgattgttatttgtaagaaagtcttacatggtcacaagattttgggcacactatttaggc--acacatataaaaatacattt 29146552  T
Q  193 tatttcattattcaaaaaataaatatt 219  Q
    |||||||||||||||||||||||||||    
T  29146553 tatttcattattcaaaaaataaatatt 29146579  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 125 - 211
Target Start/End: Original strand, 7678054 - 7678142
Alignment:
Q  125 gagaaagtcttacacggtcacaaatttttgggcacactatttaagcgcaca--cacataaaaatacattttatttcattattcaaaaaa 211  Q
    ||||||||||| || ||||||||  |||||||||||| ||||| | |||||  |||||||||||||||||||||| |||||| ||||||    
T  7678054 gagaaagtcttgcatggtcacaagcttttgggcacaccatttaggggcacacacacataaaaatacattttattttattatttaaaaaa 7678142  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 4060891 - 4060985
Alignment:
Q  125 gagaaagtcttacacggtcacaaatttttgggcacactatttaagcgcacacacataaaaatacattttatttcattattcaaaaaataaatatt 219  Q
    |||||| |||| |||||||| ||  ||||| |||||  ||||| || |||| | |||||||||||||||||||||||||  |||||||| |||||    
T  4060891 gagaaattcttgcacggtcataagcttttgagcacatcatttaggcacacatatataaaaatacattttatttcattatctaaaaaatacatatt 4060985  T

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Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 125 - 215
Target Start/End: Complemental strand, 37318063 - 37317973
Alignment:
Q  125 gagaaagtcttacacggtcacaaatttttgggcacactatttaagcgcacacacataaaaatacattttatttcattattcaaaaaataaa 215  Q
    ||||||||||| || | ||||||| |||||  ||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||    
T  37318063 gagaaagtcttgcatgttcacaaaattttgaacacactatttaggtgcacacacataaaaatacattttatttcattatttaaaaaataaa 37317973  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 215
Target Start/End: Original strand, 38889200 - 38889274
Alignment:
Q  141 gtcacaaatttttgggcacactatttaagcgcacacacataaaaatacattttatttcattattcaaaaaataaa 215  Q
    |||||||  |||||| ||||||||||| || ||| || |||||||||||||||||||||||||| ||||||||||    
T  38889200 gtcacaagcttttggacacactatttaggcacacgcatataaaaatacattttatttcattatttaaaaaataaa 38889274  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 44806062 - 44806106
Alignment:
Q  174 cacacataaaaatacattttatttcattattcaaaaaataaatat 218  Q
    |||||| ||||||||||||||||| |||||| |||||||||||||    
T  44806062 cacacacaaaaatacattttatttaattatttaaaaaataaatat 44806106  T

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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 125 - 219
Target Start/End: Original strand, 19076751 - 19076845
Alignment:
Q  125 gagaaagtcttacacggtcacaaatttttgggcacactatttaagcgcacacacataaaaatacattttatttcattattcaaaaaataaatatt 219  Q
    ||||||||||| || ||||||||  ||||| |||||  | |||||||| |||||||||||||||| |||||||||||||| ||||||||||||||    
T  19076751 gagaaagtcttgcatggtcacaaggttttgagcacatcacttaagcgcgcacacataaaaatacaatttatttcattatttaaaaaataaatatt 19076845  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 150 - 219
Target Start/End: Complemental strand, 6457077 - 6457008
Alignment:
Q  150 ttttgggcacactatttaagcgcacacacataaaaatacattttatttcattattcaaaaaataaatatt 219  Q
    |||||||||||| | |||||   |||||||||||||||||||||||||||||||| ||||||||||||||    
T  6457077 ttttgggcacaccacttaagttaacacacataaaaatacattttatttcattatttaaaaaataaatatt 6457008  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 43792965 - 43792921
Alignment:
Q  174 cacacataaaaatacattttatttcattattcaaaaaataaatat 218  Q
    |||||||||||||||||||||||| |||||| |||||||||||||    
T  43792965 cacacataaaaatacattttatttaattatttaaaaaataaatat 43792921  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 172 - 219
Target Start/End: Complemental strand, 6213641 - 6213596
Alignment:
Q  172 cacacacataaaaatacattttatttcattattcaaaaaataaatatt 219  Q
    ||||||| ||||||||||||||||||||||||  ||||||||||||||    
T  6213641 cacacacgtaaaaatacattttatttcattat--aaaaaataaatatt 6213596  T

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Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 125 - 215
Target Start/End: Original strand, 51051474 - 51051564
Alignment:
Q  125 gagaaagtcttacacggtcacaaatttttgggcacactatttaagcgcacacacataaaaatacattttatttcattattcaaaaaataaa 215  Q
    |||||| |||| || ||||||||  |||| | || | |||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  51051474 gagaaaatcttgcatggtcacaagcttttagacatattatttaggcgcacacacataaaaatacattttatttcattatttaaaaaataaa 51051564  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 150 - 215
Target Start/End: Complemental strand, 37214116 - 37214051
Alignment:
Q  150 ttttgggcacactatttaagcgcacacacataaaaatacattttatttcattattcaaaaaataaa 215  Q
    |||||| ||||| |||||  |||||||||||||||||| |||||||||||||||| ||||| ||||    
T  37214116 ttttggacacaccatttagacgcacacacataaaaatatattttatttcattatttaaaaattaaa 37214051  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 47335112 - 47335075
Alignment:
Q  181 aaaaatacattttatttcattattcaaaaaataaatat 218  Q
    ||||||||||||||||| |||||| |||||||||||||    
T  47335112 aaaaatacattttatttaattatttaaaaaataaatat 47335075  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 126 - 213
Target Start/End: Complemental strand, 5246018 - 5245932
Alignment:
Q  126 agaaagtcttacacggtcacaaatttttgggcacactatttaagcgcacacacataaaaatacattttatttcattattcaaaaaata 213  Q
    |||||||||| || ||||||||| |||||||||||| ||| |  | ||||||||| ||||||||| ||||||||||||| ||||||||    
T  5246018 agaaagtcttgcatggtcacaaacttttgggcacaccattcagacacacacacat-aaaatacatcttatttcattatttaaaaaata 5245932  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 216
Target Start/End: Complemental strand, 12602143 - 12602057
Alignment:
Q  128 aaagtcttacacggtcacaaatttttgggcacactatttaagcgcacacacataaaaatacattttatttcattattcaaaaaataaat 216  Q
    |||||||| || ||||||||  ||||| |||||| ||||| || ||||||||  ||||||||||||||||| ||||| |||||||||||    
T  12602143 aaagtcttgcatggtcacaagcttttgagcacaccatttaggcacacacaca--aaaatacattttatttcgttatttaaaaaataaat 12602057  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 219
Target Start/End: Original strand, 27511592 - 27511639
Alignment:
Q  172 cacacacataaaaatacattttatttcattattcaaaaaataaatatt 219  Q
    |||||||| | ||||||||||||||| |||||| ||||||||||||||    
T  27511592 cacacacagacaaatacattttatttaattatttaaaaaataaatatt 27511639  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 29927829 - 29927874
Alignment:
Q  173 acacacataaaaatacattttatttcattattcaaaaaataaatatt 219  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||    
T  29927829 acacacataaaaatacatttt-tttcattatttaaaaaataaatatt 29927874  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 125 - 212
Target Start/End: Complemental strand, 5798384 - 5798297
Alignment:
Q  125 gagaaagtcttacacggtcacaaatttttgggcacactatttaagcgcacacacataaaaatacattttatttcattattcaaaaaat 212  Q
    ||||||||||| || | ||||||  ||||| |||||| | |||  |||| ||| |||||||| ||||||||||||||||| |||||||    
T  5798384 gagaaagtcttgcatgatcacaagcttttgtgcacaccacttagacgcatacatataaaaatgcattttatttcattatttaaaaaat 5798297  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 36988017 - 36987953
Alignment:
Q  157 cacactatttaagcgcacacacataaaaatacattttatttcattattcaaaaaataaatattgtttt 224  Q
    |||| ||||||||||| ||||||  |||||||||||||||| ||||||  ||||||| ||||||||||    
T  36988017 cacattatttaagcgcgcacaca--aaaatacattttatttaattatt-gaaaaatatatattgtttt 36987953  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 204
Target Start/End: Complemental strand, 7441739 - 7441681
Alignment:
Q  146 aaatttttgggcacac-tatttaagcgcacacacataaaaatacattttatttcattatt 204  Q
    |||||||||||||||| ||||  | |||||||||||||||||||||||||||| ||||||    
T  7441739 aaatttttgggcacacctattgga-cgcacacacataaaaatacattttattttattatt 7441681  T

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Target: scaffold0632 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 197
Target Start/End: Complemental strand, 3483 - 3411
Alignment:
Q  125 gagaaagtcttacacggtcacaaatttttgggcacactatttaagcgcacacacataaaaatacattttattt 197  Q
    ||||||||||| || ||||||||  |||||||||||  | |||| | ||| |||| |||||||||||||||||    
T  3483 gagaaagtcttgcatggtcacaagcttttgggcacatcacttaaacacacccacagaaaaatacattttattt 3411  T

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