View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17106_low_2 (Length: 529)
Name: NF17106_low_2
Description: NF17106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17106_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 11 - 328
Target Start/End: Complemental strand, 4393918 - 4393601
Alignment:
| Q |
11 |
cagagaagcaaaacccttgtgatgtaacattgttaggaagcactattccttgtccatgatgttgcaccgggaagaagaaagtctcggtagttggtgcagt |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
4393918 |
cagagaagcaaaacccttgtgatgtaacattattaggaagcactattccttgtccatgatgttgcaccgggaagaagaaagtctcagtagttggtgcagt |
4393819 |
T |
|
| Q |
111 |
tacttgtggtggtggaagaagggtagtaacattttgagtctgaaaatatgtttggttttgattcacagaagcagttggagaattaggcacaacatcattg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4393818 |
tacttgtggtggtggaagaagggtagtaacattttgagtctgaaaatatgtttggttttgattcacagaagcagttggagaattaggcacaacatcattg |
4393719 |
T |
|
| Q |
211 |
atgttagggaaaccaagggaaaatactttggcaggtattaattcttttggtggagatttctcagaggaagatgaagaagatgagggtacagtagcagaaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4393718 |
atgttagggaaaccaagggaaaatactttggcaggtattaattcttttggtggagatttctcagaggaagatgaagaagatgagggtacagtagcagaaa |
4393619 |
T |
|
| Q |
311 |
tttgagaaagtgaattag |
328 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
4393618 |
tttgagaaagtgaattag |
4393601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 393 - 513
Target Start/End: Complemental strand, 4393536 - 4393416
Alignment:
| Q |
393 |
ttggagatggcgaagcttatgcttgcttcttgatttgcggttttggaaccaatagaaaacattagcatcaccaacttgaccatactcttgcaactgtgcc |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4393536 |
ttggagatggcgaagcttatgcttgcttcttgatttgcggttttggaaccaatagaaaacattagcatcaccaacttgaccatactcttgcaactgtgcc |
4393437 |
T |
|
| Q |
493 |
ctaatcttccttatttcttct |
513 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
4393436 |
ctaatcttccttatttcttct |
4393416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 482
Target Start/End: Complemental strand, 8284525 - 8284470
Alignment:
| Q |
427 |
ttgcggttttggaaccaatagaaaacattagcatcaccaacttgaccatactcttg |
482 |
Q |
| |
|
||||||||||| ||||| || || ||||| |||||||||||||||||| ||||||| |
|
|
| T |
8284525 |
ttgcggttttgaaaccagtaaaagacattggcatcaccaacttgaccaaactcttg |
8284470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University