View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17106_low_3 (Length: 496)

Name: NF17106_low_3
Description: NF17106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17106_low_3
NF17106_low_3
[»] chr5 (15 HSPs)
chr5 (7-461)||(24546149-24546604)
chr5 (97-485)||(22865658-22866047)
chr5 (98-465)||(25537303-25537671)
chr5 (97-401)||(25828877-25829182)
chr5 (191-365)||(26994531-26994706)
chr5 (279-410)||(31202255-31202385)
chr5 (220-315)||(24647309-24647405)
chr5 (182-363)||(26348018-26348188)
chr5 (171-314)||(22903064-22903209)
chr5 (258-315)||(21213302-21213360)
chr5 (270-315)||(18799851-18799896)
chr5 (270-315)||(25679220-25679265)
chr5 (180-246)||(18803898-18803965)
chr5 (171-312)||(20025254-20025397)
chr5 (277-315)||(18803996-18804034)
[»] chr6 (31 HSPs)
chr6 (186-496)||(34064181-34064491)
chr6 (100-477)||(19730405-19730781)
chr6 (125-401)||(12449472-12449749)
chr6 (99-477)||(9403076-9403450)
chr6 (105-411)||(31295414-31295721)
chr6 (171-364)||(27860874-27861068)
chr6 (231-485)||(19276883-19277135)
chr6 (171-315)||(22497272-22497418)
chr6 (182-315)||(34187281-34187411)
chr6 (183-363)||(12424241-12424422)
chr6 (183-315)||(16343562-16343696)
chr6 (270-354)||(13823316-13823397)
chr6 (182-315)||(20148299-20148432)
chr6 (182-315)||(22184396-22184529)
chr6 (171-315)||(12487970-12488116)
chr6 (271-315)||(14184530-14184574)
chr6 (183-312)||(23768176-23768307)
chr6 (182-325)||(19305446-19305590)
chr6 (190-362)||(689786-689958)
chr6 (172-249)||(19331721-19331799)
chr6 (171-363)||(30680963-30681156)
chr6 (270-315)||(18994051-18994096)
chr6 (381-477)||(19723361-19723457)
chr6 (133-213)||(31423906-31423986)
chr6 (182-312)||(9277278-9277409)
chr6 (182-315)||(18147288-18147423)
chr6 (281-368)||(33596944-33597030)
chr6 (226-315)||(16130995-16131085)
chr6 (270-363)||(18566729-18566821)
chr6 (284-394)||(31423733-31423842)
chr6 (183-254)||(25008426-25008498)
[»] chr7 (19 HSPs)
chr7 (99-484)||(13291929-13292315)
chr7 (122-485)||(16986897-16987261)
chr7 (182-393)||(5925372-5925584)
chr7 (182-394)||(9135257-9135470)
chr7 (177-315)||(34854220-34854360)
chr7 (182-364)||(18773963-18774146)
chr7 (181-315)||(1979043-1979179)
chr7 (182-351)||(12644767-12644938)
chr7 (270-315)||(4781474-4781519)
chr7 (270-315)||(4813905-4813950)
chr7 (182-315)||(10287570-10287705)
chr7 (262-315)||(12265099-12265153)
chr7 (171-272)||(21161213-21161314)
chr7 (202-309)||(5928991-5929100)
chr7 (270-315)||(20034387-20034432)
chr7 (182-249)||(7486527-7486595)
chr7 (177-268)||(39879364-39879456)
chr7 (182-220)||(26562899-26562937)
chr7 (97-137)||(12265246-12265286)
[»] scaffold0002 (2 HSPs)
scaffold0002 (100-446)||(379616-379963)
scaffold0002 (226-315)||(120985-121075)
[»] chr4 (18 HSPs)
chr4 (105-467)||(15741976-15742339)
chr4 (186-485)||(14601820-14602120)
chr4 (177-315)||(15514535-15514675)
chr4 (97-474)||(16012288-16012664)
chr4 (184-348)||(5518524-5518689)
chr4 (182-351)||(12683767-12683937)
chr4 (183-394)||(1638214-1638425)
chr4 (171-400)||(19643673-19643903)
chr4 (184-315)||(13896453-13896586)
chr4 (172-315)||(47253249-47253394)
chr4 (256-315)||(25066201-25066261)
chr4 (182-315)||(17110680-17110814)
chr4 (182-315)||(29157084-29157219)
chr4 (270-315)||(19564033-19564078)
chr4 (281-401)||(2674462-2674582)
chr4 (262-364)||(18463863-18463965)
chr4 (186-255)||(13171065-13171135)
chr4 (270-315)||(12415507-12415552)
[»] chr2 (25 HSPs)
chr2 (97-404)||(15825052-15825359)
chr2 (97-395)||(15390480-15390779)
chr2 (133-477)||(19050248-19050593)
chr2 (128-406)||(18135799-18136078)
chr2 (177-398)||(29710995-29711215)
chr2 (97-400)||(29137798-29138103)
chr2 (276-486)||(19290545-19290753)
chr2 (97-394)||(10923061-10923359)
chr2 (184-393)||(24157203-24157413)
chr2 (133-336)||(3586296-3586500)
chr2 (182-362)||(20120329-20120510)
chr2 (183-315)||(36267481-36267615)
chr2 (171-272)||(45714966-45715068)
chr2 (182-299)||(12168954-12169074)
chr2 (177-315)||(19919040-19919180)
chr2 (262-315)||(18772311-18772365)
chr2 (270-315)||(24318984-24319029)
chr2 (188-296)||(27846512-27846622)
chr2 (171-315)||(45258126-45258272)
chr2 (357-445)||(29743947-29744035)
chr2 (171-213)||(17671944-17671986)
chr2 (177-237)||(12127716-12127777)
chr2 (270-315)||(23257853-23257898)
chr2 (181-213)||(17626882-17626914)
chr2 (184-272)||(18770296-18770387)
[»] chr3 (21 HSPs)
chr3 (97-485)||(12731366-12731755)
chr3 (98-397)||(12516083-12516383)
chr3 (177-418)||(14859971-14860213)
chr3 (97-471)||(25495836-25496210)
chr3 (182-365)||(1770807-1770992)
chr3 (171-394)||(431212-431436)
chr3 (183-315)||(9801058-9801191)
chr3 (279-365)||(12108500-12108585)
chr3 (220-336)||(16704423-16704539)
chr3 (269-393)||(20122676-20122799)
chr3 (324-411)||(12256952-12257039)
chr3 (171-394)||(17485522-17485744)
chr3 (277-315)||(20118951-20118989)
chr3 (172-311)||(2311812-2311953)
chr3 (271-315)||(17396796-17396840)
chr3 (220-315)||(30606949-30607045)
chr3 (203-314)||(17143724-17143837)
chr3 (281-314)||(20622491-20622524)
chr3 (171-246)||(21649384-21649460)
chr3 (190-244)||(8122960-8123015)
chr3 (182-315)||(21342261-21342396)
[»] chr1 (21 HSPs)
chr1 (186-449)||(23728661-23728925)
chr1 (97-381)||(4601396-4601681)
chr1 (96-485)||(14254847-14255225)
chr1 (182-451)||(25408078-25408348)
chr1 (97-453)||(16299420-16299767)
chr1 (182-391)||(12177368-12177578)
chr1 (182-315)||(21098820-21098954)
chr1 (182-315)||(26977722-26977857)
chr1 (171-365)||(52565551-52565744)
chr1 (182-315)||(1659763-1659898)
chr1 (183-315)||(21682564-21682698)
chr1 (271-364)||(48637612-48637704)
chr1 (182-313)||(18246125-18246257)
chr1 (184-315)||(3590811-3590944)
chr1 (182-315)||(22414757-22414892)
chr1 (182-315)||(34273069-34273204)
chr1 (171-315)||(16050365-16050511)
chr1 (191-272)||(5671761-5671843)
chr1 (184-249)||(16522759-16522825)
chr1 (98-151)||(29217657-29217710)
chr1 (171-234)||(8018920-8018984)
[»] scaffold0380 (1 HSPs)
scaffold0380 (137-411)||(6739-7014)
[»] scaffold0205 (2 HSPs)
scaffold0205 (183-485)||(22869-23172)
scaffold0205 (86-315)||(10889-11120)
[»] scaffold0005 (1 HSPs)
scaffold0005 (186-485)||(215258-215558)
[»] scaffold0464 (1 HSPs)
scaffold0464 (97-406)||(11413-11719)
[»] scaffold0013 (1 HSPs)
scaffold0013 (180-315)||(4398-4535)
[»] chr8 (18 HSPs)
chr8 (183-378)||(24576495-24576691)
chr8 (122-362)||(21416660-21416901)
chr8 (95-393)||(11776140-11776431)
chr8 (182-314)||(4565368-4565502)
chr8 (189-385)||(3459390-3459586)
chr8 (133-315)||(24507391-24507574)
chr8 (251-314)||(23243836-23243900)
chr8 (188-315)||(30477629-30477758)
chr8 (97-219)||(20055476-20055598)
chr8 (262-315)||(20055627-20055680)
chr8 (182-365)||(23269228-23269400)
chr8 (182-246)||(14666883-14666948)
chr8 (180-246)||(17927748-17927815)
chr8 (171-248)||(15058006-15058084)
chr8 (188-315)||(13754746-13754875)
chr8 (183-254)||(1909744-1909816)
chr8 (284-352)||(16214713-16214780)
chr8 (226-365)||(17698210-17698349)
[»] scaffold0479 (1 HSPs)
scaffold0479 (97-407)||(4937-5246)
[»] scaffold0294 (1 HSPs)
scaffold0294 (208-365)||(167-326)
[»] scaffold0103 (1 HSPs)
scaffold0103 (180-362)||(40776-40959)
[»] scaffold0140 (1 HSPs)
scaffold0140 (137-364)||(6235-6463)
[»] scaffold0092 (2 HSPs)
scaffold0092 (183-315)||(21592-21726)
scaffold0092 (375-467)||(21441-21533)
[»] scaffold0291 (1 HSPs)
scaffold0291 (206-394)||(15326-15515)
[»] scaffold0101 (1 HSPs)
scaffold0101 (108-249)||(10759-10903)
[»] scaffold0096 (1 HSPs)
scaffold0096 (262-315)||(42311-42365)
[»] scaffold0360 (1 HSPs)
scaffold0360 (182-315)||(13904-14039)
[»] scaffold0438 (1 HSPs)
scaffold0438 (97-166)||(4280-4349)
[»] scaffold0263 (1 HSPs)
scaffold0263 (270-363)||(20424-20516)
[»] scaffold0074 (2 HSPs)
scaffold0074 (133-254)||(35186-35308)
scaffold0074 (270-315)||(53247-53292)
[»] scaffold0057 (1 HSPs)
scaffold0057 (281-349)||(73743-73810)
[»] scaffold0518 (1 HSPs)
scaffold0518 (256-338)||(9031-9113)
[»] scaffold0022 (1 HSPs)
scaffold0022 (182-233)||(69281-69333)


Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-161; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 7 - 461
Target Start/End: Original strand, 24546149 - 24546604
Alignment:
Q  7 tagtattattttctgatatagtgaaa----caaattgcttagctatttcaactatgacattattcaggttcaaagagcatacatgatctattcagtgaga 102  Q
    ||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  24546149 tagtattattttctgatatagtgaaagaaacaaattgcttagctatttcaactatgacattattcaggttcaaagagcatacatgatctatccggtgaga 24546248  T
Q  103 acggttgagttgcaatagcggcagagaattctccggtgtgac-ggtaacggctttcggcacggcaacagtgagttttcgtggtggaacgaaaggtgtctg 201  Q
    ||||||||||| |||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| ||| |||||||||||||||||||||    
T  24546249 acggttgagttacaatagcggcagcgaattctccggtgtgacgggtaatggctttcggcacggcaacagtgagtcttcatggtggaacgaaaggtgtctg 24546348  T
Q  202 caggcacgttagaactccacgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaagtgatgtgtaccttgagggtgaagc-aag 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||    |||||||||| ||||||||||||||||||||||||||| |||||||| |||    
T  24546349 caggcacgttagaactccacgctaaagtcagtaatggaattgaga----gtgtataagaagtgttgtgaaagtgatgtgtaccttgaaggtgaagcaaag 24546444  T
Q  301 ttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcg 400  Q
    ||||||||||||||| ||||| ||| |||||||||||| ||| ||||||||||| |||||||||| || || | ||||| ||||||||||||||||||||    
T  24546445 ttcacccttatatag-gcgcgcgttagccataaccgtctccgggttatgcggcgtgtgattagggacggagcaagacacgtgtagggtgatccttgcgcg 24546543  T
Q  401 aaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgctcccttaaatgtggagtc 461  Q
     ||| |||||| | ||||  |||||| ||||||| |||||||||||||||| || ||||||    
T  24546544 gaggtgcgctcctgtgtggcacggtgcacgcaagttggcgtgctcccttaagtgcggagtc 24546604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 97 - 485
Target Start/End: Original strand, 22865658 - 22866047
Alignment:
Q  97 gtgagaacggttgagttgcaatagcggcagagaattctccggtgtgacggtaacggctttcggcacggcaacagtgagttttcgtggtggaacgaaaggt 196  Q
    ||||||||  |||||| ||||  |||||||||||| ||||||||||||||||||||||||||||||||   |     || ||||  ||||||||||||||    
T  22865658 gtgagaacaattgagtagcaacggcggcagagaatgctccggtgtgacggtaacggctttcggcacggtggcgacatgtcttcgcagtggaacgaaaggt 22865757  T
Q  197 gtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgtgtaccttgagggtga 294  Q
    |  |||||| ||||||| |||   ||||| |||| |||||||||| |||||||  |||| |||||  |||||||||| ||||||||||||||||||||||    
T  22865758 gcatgcaggtacgttagcactttgacgctcaagttagtaatggaactgagaaaaagtgtgtaagaaatgttgtgaaaagtgatgtgtaccttgagggtga 22865857  T
Q  295 agcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatcct 394  Q
    ||||||||||||||||||||| ||| | |||||||||||||||  |||  ||||||| |  |||||||||| || || | ||||| ||||||||||||||    
T  22865858 agcaagttcacccttatatag-gcgtgcgttggccataaccgtttccggattatgcgacttgtgattagggacggagcatgacacgtgtagggtgatcct 22865956  T
Q  395 tgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgctcccttaaatgtggagtcttaaggtggtgtaagtttggccac 485  Q
    ||||||||||||| ||| ||||||  |  ||| ||||||| |||||||||||||||| || |||||||| ||| |||| ||||||||||||    
T  22865957 tgcgcgaaggcgcactcttatgtggaatagtgcacgcaagctggcgtgctcccttaagtgcggagtcttgaggcggtgaaagtttggccac 22866047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 98 - 465
Target Start/End: Original strand, 25537303 - 25537671
Alignment:
Q  98 tgagaacggttgagttgcaatagcggcagagaattctccggtgtgacggtaacggctttcggcacggcaacagtgagttttcgtggtggaacgaaaggtg 197  Q
    ||||||||||||| | ||||  |||| ||||||| ||| |||||||||||||||| ||  ||||||||  |   |||| |||| ||||||||||||||||    
T  25537303 tgagaacggttgaatggcaacggcggaagagaatgctctggtgtgacggtaacggtttctggcacggcggcgaagagtcttcgcggtggaacgaaaggtg 25537402  T
Q  198 tctgcaggcacgttagaactcca-cgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgtgtaccttgagggtgaa 295  Q
     ||||| ||||||||| |||||| |||| |||   ||||||||| ||||||||  ||| || || ||||||||||| ||||||| |||||||||||||||    
T  25537403 cctgcaagcacgttagcactccaacgctcaagattgtaatggaactgagaaagattgtgtatgaagtgttgtgaaaagtgatgtataccttgagggtgaa 25537502  T
Q  296 gcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatcctt 395  Q
    | |||||||||||||||||| |||||  ||||||| ||||||| ||  |||||| | || |||||||||| ||||  |||| || | |||||| ||||||    
T  25537503 gaaagttcacccttatatag-gcgcgccttggccaaaaccgtctccaggttatgtgacgtgtgattagggacgaatcaggaaacgtatagggtaatcctt 25537601  T
Q  396 gcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgctcccttaaatgtggagtcttaa 465  Q
    |||||| |||| |||| ||||||  | |||||||||  | ||| |||||||||||| || ||||||||||    
T  25537602 gcgcgagggcgagctcctatgtggcatggtgtacgcgtgctggtgtgctcccttaagtgcggagtcttaa 25537671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 97 - 401
Target Start/End: Complemental strand, 25829182 - 25828877
Alignment:
Q  97 gtgagaacggttgagttgcaatagcggcagagaattctccggtgtgacggtaacggctttcggcacggcaacagtgagttttcgtggtggaacgaaaggt 196  Q
    ||||||||| |||| | |||| || |||||||||| |||  | |||||||||||  ||||||||||||   |  | ||| |||| ||| |||| ||| ||    
T  25829182 gtgagaacgattgattagcaacagtggcagagaatactctagggtgacggtaactactttcggcacggtggcgataagtcttcgcggttgaacaaaatgt 25829083  T
Q  197 gtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgtgtaccttgagggtga 294  Q
    || | |||||||||||| | ||  |||||  ||||| ||||||||||||||||  |||| ||||| || |||||||| ||||||||| ||||||||||||    
T  25829082 gtattcaggcacgttagcaatctgacgctctagtcaataatggaattgagaaaaagtgtgtaagaagtattgtgaaaagtgatgtgtcccttgagggtga 25828983  T
Q  295 agcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatcct 394  Q
    | ||||||||||| ||||||    ||| |||||||||| ||||| ||| ||||||||||| ||||||||||||| | |||||||| ||||||| ||||||    
T  25828982 aacaagttcacccgtatataaaa-gcgtgttggccatagccgtctccgggttatgcggcgtgtgattaggggcggaataggacacgtgtagggcgatcct 25828884  T
Q  395 tgcgcga 401  Q
    |||||||    
T  25828883 tgcgcga 25828877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 191 - 365
Target Start/End: Complemental strand, 26994706 - 26994531
Alignment:
Q  191 aaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg-aaagtgatgtgtaccttga 288  Q
    |||||||||| ||| |||||||| ||||| ||||| |||||||||||||||||||||||| |||| ||  | |||||||| |||||||    |||||||     
T  26994706 aaaggtgtcttcagacacgttagcactccgacgctcaagtcagtaatggaattgagaaagagtgtttagaaggtgttgtgaaaagtgaatcataccttgg 26994607  T
Q  289 gggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggg 365  Q
    |||||||||||| |||||||||||||| ||||| ||||    ||||||||  |||||| ||||||| ||||||||||    
T  26994606 gggtgaagcaaggtcacccttatatag-gcgcgcgttgagagtaaccgtcttcgagttttgcggcgtgtgattaggg 26994531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 279 - 410
Target Start/End: Complemental strand, 31202385 - 31202255
Alignment:
Q  279 tgtaccttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggaca 378  Q
    ||||||||||||||||||||||||||||||||||||| ||||  ||||| |||||||||| |   ||||||||||| ||||||||||| | || | ||||    
T  31202385 tgtaccttgagggtgaagcaagttcacccttatatag-gcgcacgttggtcataaccgtctctaggttatgcggcgtgtgattaggggtggaggaagaca 31202287  T
Q  379 catgtagggtgatccttgcgcgaaggcgcgct 410  Q
    | |||||||| ||||| |||||  ||||||||    
T  31202286 cgtgtagggtaatcctcgcgcgggggcgcgct 31202255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 220 - 315
Target Start/End: Original strand, 24647309 - 24647405
Alignment:
Q  220 acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgtgtaccttgagggtgaagcaagttcacccttatatag 315  Q
    ||||| || |||||||||||| ||| |||| |||| ||||| ||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||    
T  24647309 acgctcaattcagtaatggaactgaaaaagagtgtgtaagaagtgttgtgaaaagtgatgtataccttaagggtgaagcaagttcacccttatatag 24647405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 182 - 363
Target Start/End: Complemental strand, 26348188 - 26348018
Alignment:
Q  182 ggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaagtgatgtg 280  Q
    |||||||||||||||||||||||||||||||| ||||| ||||| |||||| |||||||| | | | ||   || ||||           ||||| ||||    
T  26348188 ggtggaacgaaaggtgtctgcaggcacgttagcactccaacgctcaagtcattaatggaactaaaagagatagtgtaag-----------aagtgttgtg 26348100  T
Q  281 taccttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattag 363  Q
    ||||||||||||||||||||||||||||||||||| ||||  |||  |||||| |||| ||| |||||||| || ||||||||    
T  26348099 taccttgagggtgaagcaagttcacccttatatag-gcgcatgttttccataaacgtctccgggttatgcgacgtgtgattag 26348018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 171 - 314
Target Start/End: Original strand, 22903064 - 22903209
Alignment:
Q  171 tgagttttcgtggtggaacgaaaggtgtctgcaggcacgttagaactcca-cgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg 269  Q
    |||||||||| ||||||||||||||| |  | ||||| ||||| ||| || |||| ||||||||||||||| |||||||| |||| ||  | ||||||||    
T  22903064 tgagttttcgcggtggaacgaaaggttttcgtaggcatgttagcacttcaacgctcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtg 22903163  T
Q  270 -aaagtgatgtgtaccttgagggtgaagcaagttcacccttatata 314  Q
     |||||||    ||||||||||||||| |||  |||||||||||||    
T  22903164 aaaagtgaatcataccttgagggtgaaacaatatcacccttatata 22903209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 258 - 315
Target Start/End: Original strand, 21213302 - 21213360
Alignment:
Q  258 agacgtgttgtgaaa-gtgatgtgtaccttgagggtgaagcaagttcacccttatatag 315  Q
    |||||||| |||||| ||| |||||| ||||||||||||||||||||||||||||||||    
T  21213302 agacgtgtagtgaaaagtgttgtgtagcttgagggtgaagcaagttcacccttatatag 21213360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 18799851 - 18799896
Alignment:
Q  270 aaagtgatgtgtaccttgagggtgaagcaagttcacccttatatag 315  Q
    |||||| |||||||||||| | ||||||||||||||||||||||||    
T  18799851 aaagtgttgtgtaccttgatgatgaagcaagttcacccttatatag 18799896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 25679265 - 25679220
Alignment:
Q  270 aaagtgatgtgtaccttgagggtgaagcaagttcacccttatatag 315  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||    
T  25679265 aaagtgttgtctagcttgagggtgaagcaagttcacccttatatag 25679220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 246
Target Start/End: Original strand, 18803898 - 18803965
Alignment:
Q  180 gtggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgaga 246  Q
    |||||||||||||||||| ||| || |||||||| ||||| ||| | || ||||||||||||||||||    
T  18803898 gtggtggaacgaaaggtgcctgaagacacgttagcactccaacgattaattcagtaatggaattgaga 18803965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 312
Target Start/End: Original strand, 20025254 - 20025397
Alignment:
Q  171 tgagttttcgtggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg 269  Q
    ||||| |||| ||||| ||||||||||||||||  |||||||  ||||| ||||||  ||||| |||| || |||||||| |||| ||  | ||||||||    
T  20025254 tgagtcttcgcggtgggacgaaaggtgtctgcacacacgttaacactccaacgctactgtcaggaatgaaactgagaaagagtgtgtagaaagtgttgtg 20025353  T
Q  270 -aaagtgatgtgtaccttgagggtgaagcaagttcacccttata 312  Q
     |||||||    | ||||||||||||||| || |||||||||||    
T  20025354 taaagtgaatcattccttgagggtgaagctaggtcacccttata 20025397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 315
Target Start/End: Original strand, 18803996 - 18804034
Alignment:
Q  277 tgtgtaccttgagggtgaagcaagttcacccttatatag 315  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  18803996 tgtgtaccttgagggtgaagcaatttcacccgtatatag 18804034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 186 - 496
Target Start/End: Original strand, 34064181 - 34064491
Alignment:
Q  186 gaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgtgtac 283  Q
    ||||||||||||| |||||||||||||  |||   ||| | |||||||||||| || | |||||| |||| ||||| ||||||||||| |||||||||||    
T  34064181 gaacgaaaggtgtgtgcaggcacgttaacactatgacgttcaagtcagtaatgaaactaagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtac 34064280  T
Q  284 cttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgt 383  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||    
T  34064281 cttgagggtgaagcaagttcacccttatatag-gcgcgagttggccataaccgtcaccgggttatgcggcacgtgattaggggcgaagtaggacacatgt 34064379  T
Q  384 agggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgctcccttaaatgtggagtcttaaggtggtgtaagtttggcc 483  Q
    | |||||||||||||||||||||||||| | |||| ||| ||||||||||||||||||||| |||||| ||||||||||||||| |||||||||| ||||    
T  34064380 atggtgatccttgcgcgaaggcgcgctcctgtgtggtac-gtgtacgcaagatggcgtgcttccttaagtgtggagtcttaaggaggtgtaagttcggcc 34064478  T
Q  484 actgaccggtcca 496  Q
    |||||||||||||    
T  34064479 actgaccggtcca 34064491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 100 - 477
Target Start/End: Complemental strand, 19730781 - 19730405
Alignment:
Q  100 agaacggttgagttgcaatagcggcagagaattctccggtgtgacggtaacggctttcggcacggcaacagtgagttttcgtggtggaacgaaaggtgtc 199  Q
    |||| |||||||| ||||  || ||||||||| |||||||||| |||||||| ||||||||||| |  |  ||||| ||||||||||||  |||| ||      
T  19730781 agaaaggttgagtggcaacggctgcagagaatgctccggtgtggcggtaacgactttcggcacgacggcgttgagtcttcgtggtggaagtaaag-tgca 19730683  T
Q  200 tgcaggcacgttagaactcca-cgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg-aaagtgatgtgtaccttgagggtgaagc 297  Q
    |||||||| ||||| |||||| |||| |||||| |||||||| |||||||| |||| ||||| |||| ||| ||||||||||||||||||||||||||||    
T  19730682 tgcaggcatgttagcactccaacgctcaagtcaataatggaactgagaaagagtgtgtaagaagtgtcgtgtaaagtgatgtgtaccttgagggtgaagc 19730583  T
Q  298 aagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgc 397  Q
    |||||||||||||||||| | |||  ||||| ||||||||  ||  ||||| |  |  |||||| ||||||||| |||| | |||||||||||| |||||    
T  19730582 aagttcacccttatatag-gtgcgcattggctataaccgtgtccaggttatacaacatgtgatttggggcgaagcaggaaatatgtagggtgatacttgc 19730484  T
Q  398 gcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgctcccttaaatgtggagtcttaaggtggtgtaagt 477  Q
    |||||||| | ||| |||||| || |||| ||||||| |||| ||||||||||| || |||||||  |||||||| ||||    
T  19730483 gcgaaggcacactcctatgtgatatggtgcacgcaag-tggcatgctcccttaagtgaggagtctcgaggtggtgcaagt 19730405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 125 - 401
Target Start/End: Complemental strand, 12449749 - 12449472
Alignment:
Q  125 agagaattctccggtgtgacggtaacggctttcggcacggcaacagtgagttttcgtggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgc 223  Q
    ||||||| ||| |||||||| |||||| |||||||||| ||     ||||| |||||||||| |||||||||||||| ||||||||||| ||||  ||||    
T  12449749 agagaatgctctggtgtgacagtaacgactttcggcaccgcggtgatgagtcttcgtggtgggacgaaaggtgtctgtaggcacgttagcactctgacgc 12449650  T
Q  224 taaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg-aaagtgatgtgtaccttgagggtgaagcaagttcacccttatatagcgcgcga 322  Q
    | ||||||||||||||  ||| |||| |||| ||||| |||||||| |||||||||||||||||||||||||| |||||| |||||||||||| |||||     
T  12449649 tcaagtcagtaatggagctgaaaaagagtgtgtaagaagtgttgtggaaagtgatgtgtaccttgagggtgaatcaagtttacccttatatag-gcgcgc 12449551  T
Q  323 gttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcga 401  Q
    ||||| |||||| ||| ||  ||||||| | | ||||||||||||| |||||| ||| | |||||||||||||||||||    
T  12449550 gttggtcataactgtctccaggttatgcagtgtgtgattaggggcggagtaggccacgtctagggtgatccttgcgcga 12449472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 99 - 477
Target Start/End: Original strand, 9403076 - 9403450
Alignment:
Q  99 gagaacggttgagttgcaatagcggcagagaattctccggtgtgacggtaacggctttcggcacggcaacagtgagttttcgtggtggaacgaaaggtgt 198  Q
    ||||| |||||||| ||||  |||| |  |||| |||||||||||||||||||||||  | || |||| |  |||||  ||||||||||| |||| |       
T  9403076 gagaatggttgagtagcaacggcggtaaggaatgctccggtgtgacggtaacggcttctgacatggcagcgatgagtcatcgtggtggaatgaaacg--- 9403172  T
Q  199 ctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg-aaagtgatgtgtaccttgagggtgaag 296  Q
      ||||||||||||||||||| ||||| |||||| |||||||| |||||||| |||| ||||| |||||||| |||||||||||||||||||||||||||    
T  9403173 --gcaggcacgttagaactccgacgctcaagtcaataatggaactgagaaagagtgtgtaagaagtgttgtggaaagtgatgtgtaccttgagggtgaag 9403270  T
Q  297 caagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttg 396  Q
    ||||||||||||||||||| | ||| |||||||||||| | | |   |||||||| |  |||   |||| ||||| ||||||| ||||||||| ||||||    
T  9403271 caagttcacccttatatag-gtgcgcgttggccataactgcctctaggttatgcgacatgtggccagggacgaagcaggacacgtgtagggtggtccttg 9403369  T
Q  397 cgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgctcccttaaatgtggagtcttaaggtggtgtaagt 477  Q
     | |||||||||||  | ||||  | |||| ||||||| |||| || |||||||| ||| ||||||| ||| |||| ||||    
T  9403370 tgtgaaggcgcgcttttgtgtggcatggtgcacgcaagctggcatgttcccttaagtgtagagtcttgaggcggtgcaagt 9403450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 105 - 411
Target Start/End: Complemental strand, 31295721 - 31295414
Alignment:
Q  105 ggttgagttgcaatagcggcagagaattctccggtgtgacggtaacggctttcggcacggcaacagtgagttttcgtggtggaacgaaaggtgtctgcag 204  Q
    |||||||  ||||| | |||||||||| ||| |||||||| ||||  |||| |||  |||| ||   |||| |||| ||||||||||||| || ||||||    
T  31295721 ggttgaggggcaatggtggcagagaatgctcgggtgtgacagtaatagcttccggtgcggcgacgacgagtcttcgaggtggaacgaaagttgcctgcag 31295622  T
Q  205 gcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgtgtaccttgagggtgaagcaagtt 302  Q
    ||| ||||| ||| | ||||| |||||||||||| || |||||||| |||| || || ||||||||||| ||||| ||||||| ||||||||||||||||    
T  31295621 gcatgttagcacttcgacgctcaagtcagtaatgaaactgagaaagagtgtgtatgaagtgttgtgaaaagtgatatgtacctcgagggtgaagcaagtt 31295522  T
Q  303 cacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaa 402  Q
    |||||||| |||| ||| | ||||||||||||||||  || |||||||  || |||||||||  || || | ||||| |||||||||||||||||| |||    
T  31295521 cacccttacatag-gcgggggttggccataaccgtcttcgggttatgcttcgtgtgattaggaacggagcaagacacgtgtagggtgatccttgcgtgaa 31295423  T
Q  403 ggcgcgctc 411  Q
     ||||||||    
T  31295422 agcgcgctc 31295414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 171 - 364
Target Start/End: Complemental strand, 27861068 - 27860874
Alignment:
Q  171 tgagttttcgtggtggaacgaaaggtgtctgcaggcacgttagaactcca-cgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg 269  Q
    |||||||  |||||||||| ||||||||||||||||| ||||| |||| | | || ||||||||||||||| ||| | || | || ||||| ||||||||    
T  27861068 tgagtttctgtggtggaacaaaaggtgtctgcaggcatgttagtactctaacactcaagtcagtaatggaactgaaagagagagtgtaagaagtgttgtg 27860969  T
Q  270 aaa-gtgatgtgtaccttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattagg 364  Q
    ||| ||||||||||| ||||||||||||||||||||||||| ||||| ||||| |||||||||||||||| ||| ||||||||||| |||||||||    
T  27860968 aaaagtgatgtgtactttgagggtgaagcaagttcacccttttatag-gcgcgtgttggccataaccgtctccgggttatgcggcgtgtgattagg 27860874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 231 - 485
Target Start/End: Complemental strand, 19277135 - 19276883
Alignment:
Q  231 agtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgtgtaccttgagggtgaagcaagttcacccttatatagcgcgcgagttggcc 329  Q
    |||||||||| |||||||| |||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||  |||| |    
T  19277135 agtaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaagttcacccttatatag-gcgcgctttggtc 19277037  T
Q  330 ataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtac 429  Q
    ||||||||| | | |||||||||||  |||||||| ||| || |||| ||||||  ||||||||| | || ||||||| ||| | ||||  || ||| ||    
T  19277036 ataaccgtctctg-gttatgcggcgtatgattaggagcggagcaggatacatgtgtggtgatcctcgtgc-aaggcgcactcttgtgtggcacagtgcac 19276939  T
Q  430 gcaagatggcgtgctcccttaaatgtggagtcttaaggtggtgtaagtttggccac 485  Q
    ||  | ||||||||||| || | ||||||||| |||||  |||||  |||||||||    
T  19276938 gcgtgctggcgtgctcctttgagtgtggagtcctaaggctgtgtatctttggccac 19276883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 171 - 315
Target Start/End: Complemental strand, 22497418 - 22497272
Alignment:
Q  171 tgagttttcgtggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg 269  Q
    ||||| |||| | ||||||||||||||  ||||| |||||||| ||||| ||||| |||||||||||||||  || | || | |||||| | ||||||||    
T  22497418 tgagtcttcgcgatggaacgaaaggtgcttgcagacacgttagcactccgacgctcaagtcagtaatggaacagaaagagagagtataaaaagtgttgtg 22497319  T
Q  270 aaa-gtgatgtgtaccttgagggtgaagcaagttcacccttatatag 315  Q
    ||| ||| ||||||||||||||||||||||||||||||| |||||||    
T  22497318 aaaagtgttgtgtaccttgagggtgaagcaagttcacccatatatag 22497272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 182 - 315
Target Start/End: Original strand, 34187281 - 34187411
Alignment:
Q  182 ggtggaacgaaaggtgtctgcaggcacgttagaactcca-cgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaagtgatgtg 280  Q
    ||||||||||||||||||||||| |||||||| || ||| | || ||||||||||||||| |||||||| |||| ||| | |||| ||||||||||  ||    
T  34187281 ggtggaacgaaaggtgtctgcagacacgttagcacaccaacactcaagtcagtaatggaactgagaaagagtgtgtaaaaagtgtggtgaaagtgaattg 34187380  T
Q  281 taccttgagggtgaagcaagttcacccttatatag 315  Q
    |||||||||||||||||    ||||||||||||||    
T  34187381 taccttgagggtgaagc----tcacccttatatag 34187411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 183 - 363
Target Start/End: Complemental strand, 12424422 - 12424241
Alignment:
Q  183 gtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgtg 280  Q
    ||||||||||||||| ||||||||||||||| ||| | ||  | ||||||||||||||| ||||| ||   || ||| | ||||||||||| ||| ||||    
T  12424422 gtggaacgaaaggtgcctgcaggcacgttagcactacgacaatcaagtcagtaatggaactgagagagaaagtctaaaaagtgttgtgaaaagtgttgtg 12424323  T
Q  281 taccttgagggtgaagcaagttcacccttatata-gcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattag 363  Q
    |||||| ||||||||||||||||||||||||||| ||||||  ||  | |||||||||| ||| ||||||||||  ||||||||    
T  12424322 taccttaagggtgaagcaagttcacccttatataggcgcgctcgt--gacataaccgtctccgggttatgcggcatgtgattag 12424241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 183 - 315
Target Start/End: Original strand, 16343562 - 16343696
Alignment:
Q  183 gtggaacgaaaggtgtctgcaggcacgttagaactcca-cgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg-aaagtgatgtg 280  Q
    ||||| |||| |||| ||||||||||||||| |||||| | || ||||||||||||||| ||||| ||   || ||||| |||||||| |||||||||||    
T  16343562 gtggagcgaagggtgcctgcaggcacgttagcactccaacactcaagtcagtaatggaactgagagagaaagtgtaagaagtgttgtggaaagtgatgtg 16343661  T
Q  281 taccttgagggtgaagcaagttcacccttatatag 315  Q
    ||| ||||  ||||||||||||||| |||||||||    
T  16343662 tactttgaatgtgaagcaagttcacacttatatag 16343696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 270 - 354
Target Start/End: Complemental strand, 13823397 - 13823316
Alignment:
Q  270 aaagtgatgtgtaccttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcg 354  Q
    |||||| |||||||||||||||||||||||||||||| |||||||| |||| | |||| |||||||||| |||||||||||||||    
T  13823397 aaagtgttgtgtaccttgagggtgaagcaagttcacctttatatag-gcgc-acttgg-cataaccgtctccgagttatgcggcg 13823316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 182 - 315
Target Start/End: Original strand, 20148299 - 20148432
Alignment:
Q  182 ggtggaacgaaaggtgtctgcaggcacgttagaactcca-cgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg-aaagtgatgt 279  Q
    |||||||||||| |||  ||||| |||||||| |||||| |||| |||| ||||||||||||||||||| ||||| |  | |||||||| |||||||       
T  20148299 ggtggaacgaaaagtgcatgcagacacgttagcactccatcgctcaagttagtaatggaattgagaaagagtgtaga--aagtgttgtgaaaagtgaatc 20148396  T
Q  280 gtaccttgagggtgaagcaagttcacccttatatag 315  Q
     |||||||| ||||||||||| ||||||||||||||    
T  20148397 ataccttgatggtgaagcaaggtcacccttatatag 20148432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 182 - 315
Target Start/End: Complemental strand, 22184529 - 22184396
Alignment:
Q  182 ggtggaacgaaaggtgtctgcaggcacgttagaactcca-cgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg-aaagtgatgt 279  Q
    |||||||||||| |||  ||||| |||||||| |||||| |||| |||| ||||||||||||||||||| ||||| |  | |||||||| |||||||       
T  22184529 ggtggaacgaaaagtgcatgcagacacgttagcactccatcgctcaagttagtaatggaattgagaaagagtgtaga--aagtgttgtgaaaagtgaatc 22184432  T
Q  280 gtaccttgagggtgaagcaagttcacccttatatag 315  Q
     |||||||| ||||||||||| ||||||||||||||    
T  22184431 ataccttgatggtgaagcaaggtcacccttatatag 22184396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 171 - 315
Target Start/End: Complemental strand, 12488116 - 12487970
Alignment:
Q  171 tgagttttcgtggtggaacgaaaggtgtctgcaggcacgttagaactcca-cgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg 269  Q
    ||||| ||||| |||||||||| ||||  |||| ||||||||| |||| | |||| |||||| |||| ||| | | | || |||| ||||  ||||||||    
T  12488116 tgagtcttcgttgtggaacgaagggtgcatgcatgcacgttagcactctaacgctgaagtcaataatagaactaaaatagagtgtgtaagtagtgttgtg 12488017  T
Q  270 aaa-gtgatgtgtaccttgagggtgaagcaagttcacccttatatag 315  Q
    ||| ||||||||||| ||||||||||  |||||||||||||||||||    
T  12488016 aaaagtgatgtgtacattgagggtgatacaagttcacccttatatag 12487970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 271 - 315
Target Start/End: Complemental strand, 14184574 - 14184530
Alignment:
Q  271 aagtgatgtgtaccttgagggtgaagcaagttcacccttatatag 315  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  14184574 aagtgttgtgtaccttgagggtgaagcaagttcacccttatatag 14184530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 312
Target Start/End: Original strand, 23768176 - 23768307
Alignment:
Q  183 gtggaacgaaaggtgtctgcaggcacgttagaactccac-gctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg-aaagtgatgtg 280  Q
    |||||||||| ||||| | ||||||  |||| ||||||  ||| ||||||||||| ||| ||| | |  |||| ||||| |||||||| |||||||||||    
T  23768176 gtggaacgaagggtgtttacaggcatattagcactccaatgctcaagtcagtaattgaactgaaagatagtgtgtaagaagtgttgtggaaagtgatgtg 23768275  T
Q  281 taccttgagggtgaagcaagttcacccttata 312  Q
    |||||  ||||| |||||||||||||||||||    
T  23768276 tacctcaagggtaaagcaagttcacccttata 23768307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 182 - 325
Target Start/End: Original strand, 19305446 - 19305590
Alignment:
Q  182 ggtggaacgaaaggtgtctgcaggcacgttagaactcca-cgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgt 279  Q
    |||||||||||||||  ||  ||||||||||| |||  | |||| ||||||||||||||| |||| ||| |||| ||  | ||||||||||| ||||       
T  19305446 ggtggaacgaaaggttcctagaggcacgttagcacttaaacgctcaagtcagtaatggaactgagtaagagtgtgtagaaagtgttgtgaaaagtgaatc 19305545  T
Q  280 gtaccttgagggtgaagcaagttcacccttatatagcgcgcgagtt 325  Q
     |||||||||||||||||||| ||||||||| |||| |||||||||    
T  19305546 ataccttgagggtgaagcaaggtcacccttaaatag-gcgcgagtt 19305590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 362
Target Start/End: Complemental strand, 689958 - 689786
Alignment:
Q  190 gaaaggtgtctgcaggcacgttagaactccac-gctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg-aaagtgatgtgtaccttg 287  Q
    ||||||||| |||||| || |||| ||| ||  ||| ||||||||||||||| |||||||| |||| ||  | |||||||| |||||||   ||||||||    
T  689958 gaaaggtgtttgcaggtacattagcactgcaatgctcaagtcagtaatggaactgagaaagtgtgtgtataaagtgttgtgaaaagtgaatcgtaccttg 689859  T
Q  288 agggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgatta 362  Q
    ||| || | |||| |||||||||||||| ||||  ||||  ||||| |||| ||||||| ||||||| |||||||    
T  689858 aggctg-atcaaggtcacccttatatag-gcgcacgttgatcataatcgtctccgagttttgcggcgtgtgatta 689786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 249
Target Start/End: Complemental strand, 19331799 - 19331721
Alignment:
Q  172 gagttttcgtggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaag 249  Q
    |||| |||| ||||||||||||||||  |||||| ||||||| ||||| ||||| ||||||||||||||| | ||||||    
T  19331799 gagtcttcgcggtggaacgaaaggtgcttgcaggtacgttagtactccgacgcttaagtcagtaatggaactaagaaag 19331721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 363
Target Start/End: Original strand, 30680963 - 30681156
Alignment:
Q  171 tgagttttcgtggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg 269  Q
    ||||| |||| ||||| ||||||||||||||||  |||||||| ||||| ||||| |||||||||||| || ||| |||| | || ||  | || |||||    
T  30680963 tgagtcttcgcggtgggacgaaaggtgtctgcaatcacgttagcactccaacgctcaagtcagtaatgaaactgataaagagcgtgtagaatgtattgtg 30681062  T
Q  270 -aaagtgatgtgtaccttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattag 363  Q
     |||||||    |||||||||| ||||||||  ||||| ||| |||| ||||| ||||   ||||||| | ||||||| ||||||| ||||||||    
T  30681063 aaaagtgaatcataccttgaggatgaagcaatgtcacctttagatag-gcgcgcgttgagaataaccgcctccgagttttgcggcgtgtgattag 30681156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 18994051 - 18994096
Alignment:
Q  270 aaagtgatgtgtaccttgagggtgaagcaagttcacccttatatag 315  Q
    |||||| |||||||| ||||| ||||||||||||||||||||||||    
T  18994051 aaagtgttgtgtaccctgaggttgaagcaagttcacccttatatag 18994096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 477
Target Start/End: Complemental strand, 19723457 - 19723361
Alignment:
Q  381 tgtagggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgctcccttaaatgtggagtcttaaggtggtgtaagt 477  Q
    |||||||||||||||||  |||||||||||| | |||| || |||| |||   | |||||||||| ||||| || |||||||| ||| |||||||||    
T  19723457 tgtagggtgatccttgcttgaaggcgcgctcctgtgtggtatggtgcacgtgggctggcgtgctctcttaagtgcggagtcttgaggcggtgtaagt 19723361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 133 - 213
Target Start/End: Complemental strand, 31423986 - 31423906
Alignment:
Q  133 ctccggtgtgacggtaacggctttcggcacggcaacagtgagttttcgtggtggaacgaaaggtgtctgcaggcacgttag 213  Q
    |||||||||||| ||||||| || ||| ||||||||  ||| | ||||||||||||||||||||   ||||| ||||||||    
T  31423986 ctccggtgtgacagtaacggtttccggtacggcaacgttgaatcttcgtggtggaacgaaaggtccttgcagacacgttag 31423906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 312
Target Start/End: Complemental strand, 9277409 - 9277278
Alignment:
Q  182 ggtggaacgaaaggtgtctgcaggcacgttagaactcca-cgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaagtgatgtg 280  Q
    |||||||||||||||  |||||| |||||||| |||  | |||| ||||||||| ||||| |||||||| || | ||| | |||| | ||||||||        
T  9277409 ggtggaacgaaaggttcctgcagacacgttagcactataacgctcaagtcagtattggaactgagaaagagtatgtaaaaagtgtggagaaagtgaatca 9277310  T
Q  281 taccttgagggtgaagcaagttcacccttata 312  Q
    ||||||||||||||||| |  |||||||||||    
T  9277309 taccttgagggtgaagctaactcacccttata 9277278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 315
Target Start/End: Original strand, 18147288 - 18147423
Alignment:
Q  182 ggtggaacgaaaggtgtctgcaggcacgttagaactcca-cgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgt 279  Q
    |||| ||||||||||| ||| ||| ||||||  |||||| |||| |||||| ||||||||  ||||||| |||| ||  | ||||||||||| ||||       
T  18147288 ggtgaaacgaaaggtgcctgtaggaacgttaacactccaacgctcaagtcactaatggaaccgagaaagagtgtgtagaaagtgttgtgaaaagtgactc 18147387  T
Q  280 gtaccttgagggtgaagcaagttcacccttatatag 315  Q
     |||||| ||||||||||||  ||||||||||||||    
T  18147388 atacctttagggtgaagcaatgtcacccttatatag 18147423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 281 - 368
Target Start/End: Original strand, 33596944 - 33597030
Alignment:
Q  281 taccttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcg 368  Q
    |||||||||| |||||||||||||| ||||||||| |||||  |||  |||||  |||||||  ||||||||||  ||||||||||||    
T  33596944 taccttgaggatgaagcaagttcactcttatatag-gcgcgctttgagcataattgtcaccggattatgcggcgtatgattaggggcg 33597030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 226 - 315
Target Start/End: Original strand, 16130995 - 16131085
Alignment:
Q  226 aagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgtgtaccttgagggtgaagcaagttcacccttatatag 315  Q
    ||||||||||||||| ||| |||| ||||| |  | ||||||||||| ||||    ||||||||||||||| |||||| ||||||||||||    
T  16130995 aagtcagtaatggaactgataaagagtgtacagaaagtgttgtgaaacgtgaatcataccttgagggtgaaacaagtttacccttatatag 16131085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 363
Target Start/End: Original strand, 18566729 - 18566821
Alignment:
Q  270 aaagtgatgtgtaccttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattag 363  Q
    ||||||| || |||||||||||||| |||||||||||  ||||||| ||||| ||||| ||||  |||| |   ||||||||||| ||||||||    
T  18566729 aaagtgaagtctaccttgagggtgaggcaagttcacctctatatag-gcgcgggttggtcatactcgtctctaggttatgcggcgtgtgattag 18566821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 394
Target Start/End: Complemental strand, 31423842 - 31423733
Alignment:
Q  284 cttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcga--agtaggacacat 381  Q
    |||||||||||||||||| ||||||||||||| ||||| ||||| ||| |||||  ||| |||||||| || |||||  ||| | |  || |||||||||    
T  31423842 cttgagggtgaagcaagtgcacccttatatag-gcgcgtgttgggcat-accgtgtccgggttatgcgacgtgtgatcggggacaattag-aggacacat 31423746  T
Q  382 gtagggtgatcct 394  Q
    |||||||||||||    
T  31423745 gtagggtgatcct 31423733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 254
Target Start/End: Complemental strand, 25008498 - 25008426
Alignment:
Q  183 gtggaacgaaaggtgtctgcaggcacgttagaactcca-cgctaaagtcagtaatggaattgagaaagcgtgt 254  Q
    |||| ||||||||||  ||  |||||||||  |||||| |||| |||||||||||||||||||||||| ||||    
T  25008498 gtgggacgaaaggtgcatgtcggcacgttaacactccaacgctcaagtcagtaatggaattgagaaagagtgt 25008426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 156; Significance: 1e-82; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 99 - 484
Target Start/End: Complemental strand, 13292315 - 13291929
Alignment:
Q  99 gagaacggttgagttgcaatagcggcagagaattctccggtgtgacggtaacggctttcggcacggcaacagtgagttttcgtggtggaacgaaaggtgt 198  Q
    ||||||||| ||||  |||  |||||||||||| ||||| |||||||||||| | || |||||||||  |  ||||| |||||||||||| |||||||||    
T  13292315 gagaacggtcgagtgacaacggcggcagagaatgctccgatgtgacggtaacagtttccggcacggcggcgatgagtcttcgtggtggaaggaaaggtgt 13292216  T
Q  199 ctgcaggcacgttagaactcca-cgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgtgtaccttgagggtgaag 296  Q
    ||||||| ||||||| |||| | |||| |||||||||||| || ||| |||| |||| ||||| ||||||||||| ||||||||||||||||||||||||    
T  13292215 ctgcaggtacgttagcactctaacgctcaagtcagtaatgaaactgaaaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaag 13292116  T
Q  297 caagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttg 396  Q
    |||||||||| |||||||| ||||| |||||||||||||||| ||| ||||||||||| ||| |||||| || || | ||||| ||||||||||||||||    
T  13292115 caagttcaccattatatag-gcgcgcgttggccataaccgtctccgggttatgcggcgtgtggttagggacggagcatgacacgtgtagggtgatccttg 13292017  T
Q  397 cgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgctcccttaaatgtggagtcttaaggtggtgtaagtttggcca 484  Q
    ||||||||||||||| | ||||  |||||  ||||||| ||||||||| ||||| ||| |||| ||| ||| |||| ||||| |||||    
T  13292016 cgcgaaggcgcgctcctgtgtggcacggttcacgcaagctggcgtgcttccttagatgcggagccttgaggcggtgcaagttcggcca 13291929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 122 - 485
Target Start/End: Complemental strand, 16987261 - 16986897
Alignment:
Q  122 ggcagagaattctccggtgtgacggtaacggctttcggcacggcaacagtgagttttcgtggtggaacgaaaggtgtctgcaggcacgttagaactcc-a 220  Q
    |||||||||| ||||||||||||| |||||||||  || |||||  || ||||| |||| ||||||||||||||||  ||| |||||||||| ||||  |    
T  16987261 ggcagagaatgctccggtgtgacgctaacggcttctggtacggcggcaatgagtcttcgcggtggaacgaaaggtgcatgcgggcacgttagcactctga 16987162  T
Q  221 cgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgtgtaccttgagggtgaagcaagttcacccttatatagcgcg 319  Q
    | || ||| |||||||||||||||||||| |||| ||||| ||||||||||| ||||||||| |||| | |||||||||||||||||||||||||| |||    
T  16987161 cactcaagccagtaatggaattgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtcccttaaaggtgaagcaagttcacccttatatag-gcg 16987063  T
Q  320 cgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcgcgctcatatgtgc 419  Q
    || |||||||||||||||| |||  |||||||| | ||||||||||  | || ||||||| || ||||||||||||| |||| ||| | ||| ||||||     
T  16987062 cgcgttggccataaccgtctccggattatgcggtgtgtgattagggatggagcaggacacgtgcagggtgatccttgtgcgagggcacactcctatgtgg 16986963  T
Q  420 tacggtgtacgcaagatggcgtgctcccttaaatgtggagtcttaaggtggtgtaagtttggccac 485  Q
     |||||| | || || ||||||||||| | | | | |||| ||||||| |||| ||||||| ||||    
T  16986962 cacggtgcatgcgagttggcgtgctccttcagacgcggagccttaaggcggtgcaagtttgaccac 16986897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 182 - 393
Target Start/End: Complemental strand, 5925584 - 5925372
Alignment:
Q  182 ggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg-aaagtgatgt 279  Q
    |||||||||||||||||||||||||||||||| ||||| ||| | ||||||||||||||| ||||| ||   || ||||| |||| ||| |||||| |||    
T  5925584 ggtggaacgaaaggtgtctgcaggcacgttagcactccaacgatcaagtcagtaatggaactgagagagaaagtctaagaagtgtcgtgaaaagtgttgt 5925485  T
Q  280 gtaccttgagggtgaagcaagttcacccttatata-gcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggaca 378  Q
    || ||||||||||||||||||||||||||||| || ||||||  ||  | |||||||||| ||| ||||||||||| |||||  | |||| |  ||||||    
T  5925484 gttccttgagggtgaagcaagttcacccttatgtaggcgcgctcgt--ggcataaccgtctccgggttatgcggcgtgtgatctgaggcggaaaaggaca 5925387  T
Q  379 catgtagggtgatcc 393  Q
    | ||||| |||||||    
T  5925386 cgtgtagcgtgatcc 5925372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 182 - 394
Target Start/End: Complemental strand, 9135470 - 9135257
Alignment:
Q  182 ggtggaacgaaaggtgtctgcaggcacgttagaactcca-cgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgt 279  Q
    ||||||||||||||||  |  ||||||||||| |||| | |||| |||||||||||||||||||||||| |||| ||| |  |||||||||| ||||       
T  9135470 ggtggaacgaaaggtgcatataggcacgttagcactctaacgctcaagtcagtaatggaattgagaaagagtgtgtaaaaactgttgtgaaaagtgaatc 9135371  T
Q  280 gtaccttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacac 379  Q
     ||||||||||||||||||| |||||||||||||||  | ||  |||| |||||||||| ||| ||||||  ||| |||||||||| || || |||||||    
T  9135370 ataccttgagggtgaagcaaattcacccttatatag-acacgtattggtcataaccgtctccgggttatgtagcgtgtgattagggacggaggaggacac 9135272  T
Q  380 atgtagggtgatcct 394  Q
    ||||| |||||||||    
T  9135271 atgtaaggtgatcct 9135257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 177 - 315
Target Start/End: Original strand, 34854220 - 34854360
Alignment:
Q  177 ttcgtggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gt 274  Q
    |||||||||||||||| ||||| ||||| |||||||| ||||  ||||| |||| ||||||| || |||||||| |||| |||||  |||||||||| ||    
T  34854220 ttcgtggtggaacgaacggtgtttgcagacacgttagcactctgacgctcaagttagtaatgaaactgagaaagagtgtgtaagaaatgttgtgaaaagt 34854319  T
Q  275 gatgtgtaccttgagggtgaagcaagttcacccttatatag 315  Q
    |||||||||  |||||||||| |||||||||||||||||||    
T  34854320 gatgtgtactctgagggtgaaacaagttcacccttatatag 34854360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 182 - 364
Target Start/End: Original strand, 18773963 - 18774146
Alignment:
Q  182 ggtggaacgaaaggtgtctgcaggcacgttagaac-tccacgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg-aaagtgatgt 279  Q
    ||||||||||||||||  |||||||||||||| || || ||| | || |||||||||||| ||||| ||   ||  |||| |||| ||| |||||| |||    
T  18773963 ggtggaacgaaaggtgcatgcaggcacgttagcacttcgacgatcaaatcagtaatggaactgagagagaaagtcaaagaagtgtagtgaaaagtgttgt 18774062  T
Q  280 gtaccttgagggtgaagcaagttcacccttatatag-cgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattagg 364  Q
    |||||||||||||||| ||| ||||||||||||||| || ||   |||| |||||||||| |||||||||||||||  ||||||||    
T  18774063 gtaccttgagggtgaaacaaattcacccttatatagacgtgc-tcttgg-cataaccgtctccgagttatgcggcgtatgattagg 18774146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 181 - 315
Target Start/End: Original strand, 1979043 - 1979179
Alignment:
Q  181 tggtggaacgaaaggtgtctgcaggcacgttagaactc-cacgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaa-agtgatg 278  Q
    ||||| ||||||||||| ||||| ||||||||| ||||  ||||| ||||||||||||||| ||||| ||   || ||||| |||||||||| |||| ||    
T  1979043 tggtgaaacgaaaggtgcctgcaagcacgttagtactctgacgctcaagtcagtaatggaactgagagagaaagtctaagaagtgttgtgaagagtgttg 1979142  T
Q  279 tgtaccttgagggtgaagcaagttcacccttatatag 315  Q
    ||||  ||| | |||||||||||||||| ||||||||    
T  1979143 tgtatattgggagtgaagcaagttcacctttatatag 1979179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 182 - 351
Target Start/End: Original strand, 12644767 - 12644938
Alignment:
Q  182 ggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttg-tgaaa-gtgatg 278  Q
    ||||||||||||||||  |||||||| ||||| ||||| ||||| | ||||||||||||| |||||||  |||| |   | |||||| ||||| ||||      
T  12644767 ggtggaacgaaaggtgcatgcaggcaagttagcactccgacgctcaggtcagtaatggaactgagaaaaagtgtgtggaaagtgttggtgaaaagtgaat 12644866  T
Q  279 tgtaccttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcg 351  Q
    ||||| ||||||||||||||||||||||||| || || ||||| ||||| ||||||||||  || ||||||||    
T  12644867 tgtacgttgagggtgaagcaagttcacccttgtagag-gcgcgcgttggtcataaccgtcttcgggttatgcg 12644938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 4781519 - 4781474
Alignment:
Q  270 aaagtgatgtgtaccttgagggtgaagcaagttcacccttatatag 315  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  4781519 aaagtgttgtgtaccttgagggtgaagcaagttcacccttatatag 4781474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 4813950 - 4813905
Alignment:
Q  270 aaagtgatgtgtaccttgagggtgaagcaagttcacccttatatag 315  Q
    |||||| |||||||||||||||||||||||||||||||||||||||    
T  4813950 aaagtgttgtgtaccttgagggtgaagcaagttcacccttatatag 4813905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 315
Target Start/End: Complemental strand, 10287705 - 10287570
Alignment:
Q  182 ggtggaacgaaaggtgtctgcaggcacgttagaac-tccacgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg-aaagtgatgt 279  Q
    |||||||| ||||||  ||||||||||||||| || |  ||||| ||||||||||||||  |||||||  |||| ||||| |||||||| |||||||       
T  10287705 ggtggaaccaaaggttcctgcaggcacgttagcaccttaacgctcaagtcagtaatggatctgagaaaaagtgtgtaagaagtgttgtgaaaagtgagag 10287606  T
Q  280 gtaccttgagggtgaagcaagttcacccttatatag 315  Q
     ||||||||||||| | |||||| ||||||||||||    
T  10287605 ataccttgagggtgtaacaagtttacccttatatag 10287570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 262 - 315
Target Start/End: Complemental strand, 12265153 - 12265099
Alignment:
Q  262 gtgttgtgaaa-gtgatgtgtaccttgagggtgaagcaagttcacccttatatag 315  Q
    ||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||    
T  12265153 gtgttgtgaaaagtgatgcgtaccttgagggtcaagcaagttcacccttatatag 12265099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 171 - 272
Target Start/End: Original strand, 21161213 - 21161314
Alignment:
Q  171 tgagttttcgtggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg 269  Q
    ||||| |||| ||||||||||||| |||||||||||||||||| ||||| ||||| ||||||||||||||  | |||||| |||| ||  | ||||||||    
T  21161213 tgagtcttcgcggtggaacgaaag-tgtctgcaggcacgttagcactccaacgctcaagtcagtaatggagctaagaaagtgtgtgtagaaagtgttgtg 21161311  T
Q  270 aaa 272  Q
    |||    
T  21161312 aaa 21161314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 202 - 309
Target Start/End: Complemental strand, 5929100 - 5928991
Alignment:
Q  202 caggcacgttagaactcca-cgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgtgtaccttgagggtgaagcaa 299  Q
    ||||||| |||| |||||| | || ||||||||||||||| ||| | || | || ||||| ||||||||||| ||||||||| ||||| |||||||||||    
T  5929100 caggcacattagcactccaacactcaagtcagtaatggaactgaaagagagagtgtaagaagtgttgtgaaaagtgatgtgtcccttgggggtgaagcaa 5929001  T
Q  300 gttcaccctt 309  Q
     |||||||||    
T  5929000 attcaccctt 5928991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 20034387 - 20034432
Alignment:
Q  270 aaagtgatgtgtaccttgagggtgaagcaagttcacccttatatag 315  Q
    |||||| |||||||||||||||| |||||||| |||||||||||||    
T  20034387 aaagtgttgtgtaccttgagggtaaagcaagtacacccttatatag 20034432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 7486527 - 7486595
Alignment:
Q  182 ggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaag 249  Q
    ||||||| ||||||||  |||||||||||||| ||||| ||||| || |||||||||||| ||||||||    
T  7486527 ggtggaatgaaaggtgcatgcaggcacgttagcactccaacgctcaattcagtaatggaactgagaaag 7486595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 177 - 268
Target Start/End: Original strand, 39879364 - 39879456
Alignment:
Q  177 ttcgtggtggaacgaaaggtgtctgcaggcacgttagaac-tccacgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgt 268  Q
    ||||||||||||||||||||| |||||| |||||||  || |  ||||| |||||||||||| || |||||||| |||| ||| | |||||||    
T  39879364 ttcgtggtggaacgaaaggtgcctgcagacacgttaacactttaacgctcaagtcagtaatgaaactgagaaagagtgtgtaaaaagtgttgt 39879456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 182 - 220
Target Start/End: Original strand, 26562899 - 26562937
Alignment:
Q  182 ggtggaacgaaaggtgtctgcaggcacgttagaactcca 220  Q
    ||||||||||||||||||||||||||| |||| ||||||    
T  26562899 ggtggaacgaaaggtgtctgcaggcacattagcactcca 26562937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 97 - 137
Target Start/End: Complemental strand, 12265286 - 12265246
Alignment:
Q  97 gtgagaacggttgagttgcaatagcggcagagaattctccg 137  Q
    |||||||||||||||| ||||| |||||||||||| |||||    
T  12265286 gtgagaacggttgagtcgcaatggcggcagagaatgctccg 12265246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 121; Significance: 9e-62; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 100 - 446
Target Start/End: Original strand, 379616 - 379963
Alignment:
Q  100 agaacggttgagttgcaatagcggcagagaattctccggtgtgacggtaacggctttcggcacggcaacagtgagttttcgtggtggaacgaaaggtgtc 199  Q
    ||||||||||||| |||| || |||||||||| |||||||||||| ||||| |||| ||| ||||| ||  ||||| |||| ||||||||||||||||      
T  379616 agaacggttgagtggcaacagtggcagagaatgctccggtgtgactgtaacagcttccggtacggcgacgatgagtcttcgcggtggaacgaaaggtgca 379715  T
Q  200 tgcaggcacgttagaac-tccacgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg-aaagtgatgtgtaccttgagggtgaagc 297  Q
    |  ||||||||||| || |  || || ||||||||||||||| |||||||| |||| ||||| |||||||| ||||||||||||||||||||||||||||    
T  379716 tctaggcacgttagcactttgacactgaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaagc 379815  T
Q  298 aagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgc 397  Q
    |||||||||| ||||||| ||||  ||||| ||||||| || | || |||||||||| ||||||| || || || ||||||| ||||||||||||||       
T  379816 aagttcacccgtatatag-gcgcatgttggtcataaccatctctgaattatgcggcgtgtgattatggacggagcaggacacgtgtagggtgatcctctt 379914  T
Q  398 gcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgctcc 446  Q
    | |||||||||||| | ||||  |||||| ||||||| |||| ||||||    
T  379915 gtgaaggcgcgctcctgtgtggcacggtgcacgcaagctggcatgctcc 379963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 226 - 315
Target Start/End: Complemental strand, 121075 - 120985
Alignment:
Q  226 aagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgtgtaccttgagggtgaagcaagttcacccttatatag 315  Q
    ||||||||||||||| |||||||| |||| ||  | ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||    
T  121075 aagtcagtaatggaactgagaaagagtgtgtataaagtgttgtgaaaagtgatgtgtaccttgagggtgaagcaaattcacccttatatag 120985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 118; Significance: 5e-60; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 105 - 467
Target Start/End: Complemental strand, 15742339 - 15741976
Alignment:
Q  105 ggttgagttgcaatagcggcagagaattctccggtgtgacggtaacggctttcggcacggcaacagtgagttttcgtggtggaacgaaaggtgtctgcag 204  Q
    |||||||| ||||  |||| | ||||| |||||||||||||||||||| ||  | |||||| ||  ||||| ||||||||||| ||||||||| |||| |    
T  15742339 ggttgagtggcaacggcggtatagaatgctccggtgtgacggtaacggtttctgacacggcgacgatgagtcttcgtggtggagcgaaaggtgcctgctg 15742240  T
Q  205 gcacgttagaactc-cacgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg-aaagtgatgtgtaccttgagggtgaagcaagtt 302  Q
    ||||||||| ||||  ||||| ||||||||||||||| |||||||  |||| ||||| |||||||| ||||||||||||||||||||  |||||||| ||    
T  15742239 gcacgttagcactcttacgctcaagtcagtaatggaactgagaaaaagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagactgaagcaaatt 15742140  T
Q  303 cacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaa 402  Q
    ||||||||||||| ||||| |||||||||||||||| ||| ||||||||||| ||||||| || || || | ||||| ||||||||||||||||  |||     
T  15742139 cacccttatatag-gcgcgtgttggccataaccgtctccgggttatgcggcgtgtgattaaggacg-agcaagacacgtgtagggtgatccttgtacgag 15742042  T
Q  403 gg-cgcgctcatatgtgctacggtgtacgcaagatggcgtgctcccttaaatgtggagtcttaagg 467  Q
    || ||||||| | ||||  || ||| ||||||  ||||||||||| ||  ||||| ||||||||||    
T  15742041 ggacgcgctcctgtgtggcacagtgcacgcaaactggcgtgctcctttggatgtgaagtcttaagg 15741976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 186 - 485
Target Start/End: Complemental strand, 14602120 - 14601820
Alignment:
Q  186 gaacgaaaggtgtctgcaggcacgttagaactcca-cgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgtgtac 283  Q
    ||||||||| |||||||||||||||||| | |||| |||| |||||||||||| || ||| | || |||| ||||| ||||||||||| ||| |||||||    
T  14602120 gaacgaaagttgtctgcaggcacgttagcaatccaacgctcaagtcagtaatgaaactgaaagagagtgtgtaagaagtgttgtgaaaagtgttgtgtac 14602021  T
Q  284 cttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgt 383  Q
    ||||||||||||||||||||| ||||||||||| || | ||||  |||||| ||| ||| ||||||||||| ||||||||| |||  | ||||||| |||    
T  14602020 cttgagggtgaagcaagttcatccttatatagc-cgtgtgttgatcataactgtctccgggttatgcggcgtgtgattaggagcggggaaggacacgtgt 14601922  T
Q  384 agggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgctcccttaaatgtggagtcttaaggtggtgtaagtttggcc 483  Q
    | || ||||| | || | ||| | |||  | || |  |||||| ||||||| ||||||||||| || | || |||||| ||||| |||||||||| ||||    
T  14601921 aaggcgatccctacgaggaggtgtgcttctgtgaggcacggtgcacgcaagctggcgtgctcctttgagtgcggagtcgtaaggaggtgtaagttaggcc 14601822  T
Q  484 ac 485  Q
    ||    
T  14601821 ac 14601820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 177 - 315
Target Start/End: Complemental strand, 15514675 - 15514535
Alignment:
Q  177 ttcgtggtggaacgaaaggtgtctgcaggcacgttagaactcca-cgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg-aaagt 274  Q
    |||| ||||||||||| |||| ||| ||||||||||| |||||| |||| ||||||||||||||| ||| |||| |||| ||||| |||||||| |||||    
T  15514675 ttcgcggtggaacgaagggtgcctgtaggcacgttagcactccaacgctcaagtcagtaatggaactgaaaaagagtgtgtaagaagtgttgtggaaagt 15514576  T
Q  275 gatgtgtaccttgagggtgaagcaagttcacccttatatag 315  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  15514575 gatgtgtaccttgagggtgaagcaagttcacccttatatag 15514535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 97 - 474
Target Start/End: Complemental strand, 16012664 - 16012288
Alignment:
Q  97 gtgagaacggttgagttgcaatagcggcagagaattctccggtgtgacggtaacggctttcggcacggcaacagtgagttttcgtggtggaacgaaaggt 196  Q
    |||||||||||||||| ||||  | |||||||||| | | ||||||| |||||||||||  |||||| ||| | |  || |||  || || ||||| |||    
T  16012664 gtgagaacggttgagtggcaacggtggcagagaatgcactggtgtgatggtaacggcttcgggcacgacaaga-tccgtcttcacggagggacgaatggt 16012566  T
Q  197 gtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtga-aagtgatgtgtaccttgagggtga 294  Q
      ||||||||||||||  ||||| ||||| ||||||||||||||| ||||| || |||| ||||| |  |||||| ||||||| |||| ||||||| |||    
T  16012565 acctgcaggcacgttaacactccgacgctcaagtcagtaatggaactgagatagagtgtgtaagaagcattgtgagaagtgatatgtatcttgagg-tga 16012467  T
Q  295 agcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatcct 394  Q
    ||||||||||||||||||||| ||||| |||||  |||| |||  ||||||||||||||| |||||||| | || || || |||| ||||||||||||||    
T  16012466 agcaagttcacccttatatag-gcgcgcgttggtaataatcgtatccgagttatgcggcgtgtgattagtgacggagcagaacacgtgtagggtgatcct 16012368  T
Q  395 tgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgctcccttaaatgtggagtcttaaggtggtgta 474  Q
    |  ||||  |||||||| | || |  |||||| || |||| |||| || |||||||  || | |||||||||| ||||||    
T  16012367 tatgcgagagcgcgctcctgtgcggcacggtgcacacaagttggcatgttcccttaggtgcgaagtcttaaggcggtgta 16012288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 184 - 348
Target Start/End: Original strand, 5518524 - 5518689
Alignment:
Q  184 tggaacgaaaggtgtctgcaggcacgttagaactcca-cgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg-aaagtgatgtgt 281  Q
    ||||||||||||||  ||||| |||||||| ||| || |||| ||||||||||| ||| ||||| ||  ||| ||||| |||||||| ||||||||| ||    
T  5518524 tggaacgaaaggtgagtgcagacacgttagcacttcaacgctcaagtcagtaattgaactgagagagaatgtgtaagaagtgttgtggaaagtgatgcgt 5518623  T
Q  282 accttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttat 348  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| ||| |||||    
T  5518624 accttgagggtgaagcaagttcacccttatatag-gcgcgtgttgggcataaccgtctccgggttat 5518689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 182 - 351
Target Start/End: Original strand, 12683767 - 12683937
Alignment:
Q  182 ggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg-aaagtgatgt 279  Q
    |||||||||||||||| ||||||||||||||| ||||| ||||| |||| ||||||| || |||||||| |||| ||  | |||||||| |||||||       
T  12683767 ggtggaacgaaaggtgcctgcaggcacgttagcactccaacgctcaagttagtaatgaaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaatc 12683866  T
Q  280 gtaccttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcg 351  Q
     |||||| |||||||||||||||||||||||| ||| |||||  ||   |||||||||| ||||||||||||    
T  12683867 ataccttaagggtgaagcaagttcacccttatctag-gcgcgcattaagcataaccgtctccgagttatgcg 12683937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 183 - 394
Target Start/End: Complemental strand, 1638425 - 1638214
Alignment:
Q  183 gtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg-aaagtgatgtg 280  Q
    |||||||||||||||| |||| |||| |||| ||||| ||| | ||||||||||||||| ||||| ||   || ||||| |||||  | |||||| ||||    
T  1638425 gtggaacgaaaggtgtttgca-gcactttagcactccgacgatcaagtcagtaatggaactgagagagaaagtctaagaagtgttaagaaaagtgttgtg 1638327  T
Q  281 taccttgagggtgaagcaagttcacccttatata-gcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacac 379  Q
    |||||||||||||||||||||||||||||||||| | ||||  ||  | |||||||||| ||| ||||||||||   |||||||| |||  | |||||||    
T  1638326 taccttgagggtgaagcaagttcacccttatataggtgcgctcgt--ggcataaccgtctccgggttatgcggcatatgattaggagcggggaaggacac 1638229  T
Q  380 atgtagggtgatcct 394  Q
     ||||| ||||||||    
T  1638228 gtgtagcgtgatcct 1638214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 171 - 400
Target Start/End: Original strand, 19643673 - 19643903
Alignment:
Q  171 tgagttttcgtggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg 269  Q
    ||||| |||||| ||||||| |||||| | ||||| ||||||  | ||| ||||| ||||||||||||||| |||||||| |||| ||  | || |||||    
T  19643673 tgagtcttcgtgatggaacggaaggtgcccgcaggtacgttaccaatccgacgcttaagtcagtaatggaactgagaaagagtgtgtagaaagtcttgtg 19643772  T
Q  270 aaa-gtgatgtgtaccttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcg 368  Q
    ||| ||||    ||||||||||||||| ||||||||||||||||||| ||| | ||||   ||||||||| | ||||||||||||| | |||||||| ||    
T  19643773 aaaagtgaatcataccttgagggtgaaacaagttcacccttatatag-gcgtgcgttgaggataaccgtctctgagttatgcggcgtgagattagggacg 19643871  T
Q  369 aagtaggacacatgtagggtgatccttgcgcg 400  Q
        ||||||||| || ||||||||| |||||    
T  19643872 gtagaggacacatataaggtgatcctcgcgcg 19643903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 184 - 315
Target Start/End: Complemental strand, 13896586 - 13896453
Alignment:
Q  184 tggaacgaaaggtgtctgcaggcacgttagaactcca-cgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg-aaagtgatgtgt 281  Q
    ||||||||| |||| ||||| ||||||||  |||| | ||||  || |||||| |||| ||| | ||  ||||||||| |||||||| ||||||||||||    
T  13896586 tggaacgaagggtgcctgcaagcacgttatcactcaaacgctctagccagtaagggaactgaaagagattgtataagaagtgttgtggaaagtgatgtgt 13896487  T
Q  282 accttgagggtgaagcaagttcacccttatatag 315  Q
    ||||||||||| ||| ||||||||||||||||||    
T  13896486 accttgagggtaaagaaagttcacccttatatag 13896453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 172 - 315
Target Start/End: Original strand, 47253249 - 47253394
Alignment:
Q  172 gagttttcgtggtggaacgaaaggtgtctgcaggcacgttagaactcca-cgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg- 269  Q
    |||| |||| ||||| || |||||||  |||||||| ||||| |||||| |||| ||||||||||||||| |||||||| |||| ||| | ||||||||     
T  47253249 gagtcttcggggtgggacaaaaggtgcttgcaggcatgttagcactccaacgctcaagtcagtaatggaactgagaaagagtgtgtaaaaagtgttgtga 47253348  T
Q  270 aaagtgatgtgtaccttgagggtgaagcaagttcacccttatatag 315  Q
    |||||||    ||||||||||||||||| |  ||||||||||||||    
T  47253349 aaagtgaatcataccttgagggtgaagctaagtcacccttatatag 47253394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 256 - 315
Target Start/End: Original strand, 25066201 - 25066261
Alignment:
Q  256 taagacgtgttgtgaaa-gtgatgtgtaccttgagggtgaagcaagttcacccttatatag 315  Q
    ||||||||||||||||| ||| |||||||||||||| ||||||||||| ||||||||||||    
T  25066201 taagacgtgttgtgaaaagtgttgtgtaccttgaggttgaagcaagtttacccttatatag 25066261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 315
Target Start/End: Original strand, 17110680 - 17110814
Alignment:
Q  182 ggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg-aaagtgatgt 279  Q
    |||||||||||| ||| ||||| ||||||||| ||||| ||| | ||||||||||||||||||||| |    || | ||| |||||| | |||||  |||    
T  17110680 ggtggaacgaaatgtgcctgcaagcacgttagcactccgacgatcaagtcagtaatggaattgagaga-aaagtcttagaagtgttgcgaaaagtattgt 17110778  T
Q  280 gtaccttgagggtgaagcaagttcacccttatatag 315  Q
    ||| ||||||||||||||||||||||||||| ||||    
T  17110779 gtatcttgagggtgaagcaagttcacccttacatag 17110814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 315
Target Start/End: Original strand, 29157084 - 29157219
Alignment:
Q  182 ggtggaacgaaaggtgtctgcaggcacgttagaactcca-cgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg-aaagtgatgt 279  Q
    ||||||||||||||||  ||||| |||||| | |||||| |||| |||| |||||||||| |||||||  |||| ||  | |||||||| |||||||       
T  29157084 ggtggaacgaaaggtgcatgcagacacgtttgcactccaacgctcaagttagtaatggaactgagaaaaagtgtgtagtaagtgttgtgtaaagtgaacc 29157183  T
Q  280 gtaccttgagggtgaagcaagttcacccttatatag 315  Q
     |||||||| ||||||| ||||||||||||||||||    
T  29157184 ataccttgatggtgaagtaagttcacccttatatag 29157219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 19564033 - 19564078
Alignment:
Q  270 aaagtgatgtgtaccttgagggtgaagcaagttcacccttatatag 315  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||    
T  19564033 aaagtgttgtgtaccttgagggtgaagcaagttcaccgttatatag 19564078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 281 - 401
Target Start/End: Complemental strand, 2674582 - 2674462
Alignment:
Q  281 taccttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagt---aggac 377  Q
    |||||||||| ||||| |||||||||||||||||  ||||| ||||  |||||||||| |||  || ||||||| |||||||||| |  |||   |||||    
T  2674582 taccttgaggatgaagtaagttcacccttatata-agcgcgcgttgagcataaccgtctccggattttgcggcgtgtgattagggac--agttagaggac 2674486  T
Q  378 acatgtagggtgatccttgcgcga 401  Q
    || |||||||||||||| ||||||    
T  2674485 acgtgtagggtgatcctcgcgcga 2674462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 262 - 364
Target Start/End: Original strand, 18463863 - 18463965
Alignment:
Q  262 gtgttgtgaaa-gtgatgtgtaccttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgat 360  Q
    ||||||||||| ||| |||||| |||||||||||| ||| |||| |||||||||| |||||  |  | |||||||||| ||| |||||||||||  ||||    
T  18463863 gtgttgtgaaaagtgttgtgtatcttgagggtgaaacaatttcatccttatatag-gcgcgcttgtggcataaccgtctccgggttatgcggcgtatgat 18463961  T
Q  361 tagg 364  Q
    ||||    
T  18463962 tagg 18463965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 255
Target Start/End: Original strand, 13171065 - 13171135
Alignment:
Q  186 gaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgta 255  Q
    ||||||||||||  |||||||||||||| ||||| || || ||||||||||||||| |||| ||| |||||    
T  13171065 gaacgaaaggtgcttgcaggcacgttagcactccaactctcaagtcagtaatggaactgagcaagagtgta 13171135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 12415507 - 12415552
Alignment:
Q  270 aaagtgatgtgtaccttgagggtgaagcaagttcacccttatatag 315  Q
    |||||| ||||||| |||||||| ||| ||||||||||||||||||    
T  12415507 aaagtgttgtgtactttgagggtaaagtaagttcacccttatatag 12415552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 110; Significance: 3e-55; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 97 - 404
Target Start/End: Original strand, 15825052 - 15825359
Alignment:
Q  97 gtgagaacggttgagttgcaatagcggcagagaattctccggtgtgacggtaacggctttcggcacggcaacagtgagttttcgtggtggaacgaaaggt 196  Q
    |||||||| |||||||  |||  | ||||||||||  |||||||||||| ||| ||||  |||||||||   |  |||| || |||||||||||||| ||    
T  15825052 gtgagaacagttgagtgacaacggtggcagagaatgttccggtgtgacgataatggctaccggcacggcggtaa-gagtctttgtggtggaacgaaatgt 15825150  T
Q  197 gtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgtgtaccttgagggtga 294  Q
    ||||||||||||||||| |||   ||||| ||||| ||||||||| |||||||| |||| ||  | ||||||||||| || |||||||||||||||||||    
T  15825151 gtctgcaggcacgttagcactttgacgctcaagtcggtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtcatgtgtaccttgagggtga 15825250  T
Q  295 agcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatcct 394  Q
    ||||||||||||||| ||||| ||||| ||||| ||||||||||  |||||||||||||| ||| ||| || || |||||||||||||||||||||||||    
T  15825251 agcaagttcacccttgtatag-gcgcgcgttggtcataaccgtcttcgagttatgcggcgtgtgtttaaggacggagtaggacacatgtagggtgatcct 15825349  T
Q  395 tgcgcgaagg 404  Q
    || |||||||    
T  15825350 tgtgcgaagg 15825359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 97 - 395
Target Start/End: Complemental strand, 15390779 - 15390480
Alignment:
Q  97 gtgagaacggttgagttgcaatagcggcagagaattctccggtgtgacggtaacggctttcggcacggcaacagtgagttttcgtggtggaacgaaaggt 196  Q
    |||||||||||||||| ||||  | | |||||||| |||  |||||||||||||||||| |||||||||| |  ||||| |||| | ||||||||||| |    
T  15390779 gtgagaacggttgagtggcaacggtgccagagaatgctctagtgtgacggtaacggcttccggcacggcagcgatgagtcttcgcgatggaacgaaagct 15390680  T
Q  197 gtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgtgtaccttgagggtga 294  Q
    | ||   |||||||||| |||   ||||| |||| ||| |||||| | | |||  |||| ||||| ||||||||||| ||||||||||||||||||||||    
T  15390679 gcctattggcacgttagcactttgacgctcaagtaagtgatggaactaataaacagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtga 15390580  T
Q  295 agcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatcct 394  Q
    ||||||||||||||||||||| ||||| || ||||||||||||| ||| ||||||||  | |||||||||| || || ||||||| ||||||||||||||    
T  15390579 agcaagttcacccttatatag-gcgcgcgtaggccataaccgtccccgggttatgcgatgtgtgattagggacggagcaggacacgtgtagggtgatcct 15390481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 133 - 477
Target Start/End: Complemental strand, 19050593 - 19050248
Alignment:
Q  133 ctccggtgtgacggtaacggctttcggcacggcaacagtgagttttcgtggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtca 231  Q
    |||||||||||| |||||   ||||| |||| || |  ||||| |||| ||||||||||||||| | ||||| | |||||| ||||  ||||| ||||||    
T  19050593 ctccggtgtgacagtaacaattttcgacacgacagcgatgagtgttcgcggtggaacgaaaggtatttgcagacccgttagcactctgacgctcaagtca 19050494  T
Q  232 gtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgtgtaccttgagggtgaagcaagttcacccttatatagcgcgcgagttggcca 330  Q
    ||||| ||| | |||||| | || ||||| ||||||||||| |||||||||||| |||| |||||| |||||||||||||||||| ||  | ||||||||    
T  19050493 gtaatagaactaagaaagagagtgtaagaagtgttgtgaaaagtgatgtgtaccctgagagtgaagtaagttcacccttatatag-gcttgcgttggcca 19050395  T
Q  331 taaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacg 430  Q
    ||||   | ||| |||||||||||  ||||||||   | || ||||||  |||||||||||| |||||| ||||||||||| | |||| || |||| |||    
T  19050394 taactaactccgggttatgcggcgtatgattaggcatggagcaggacatgtgtagggtgatctttgcgcaaaggcgcgctcctgtgtggtatggtgcacg 19050295  T
Q  431 caagatggcgtgctcccttaaatgtggagtcttaaggtggtgtaagt 477  Q
    | || | || |||||||| || || |||||||||||| |||||||||    
T  19050294 cgaggtcgcttgctccctaaagtgcggagtcttaaggcggtgtaagt 19050248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 128 - 406
Target Start/End: Original strand, 18135799 - 18136078
Alignment:
Q  128 gaattctccggtgtgacggtaacggctttcggcacggcaacagtgagttttcgtggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaa 226  Q
    |||||||||||||||| ||||||  |||||||  ||||  |  ||||| |||  ||||| | |||||||| ||| ||||||||||| ||||  ||||| |    
T  18135799 gaattctccggtgtgatggtaaccactttcggtgcggcggcgttgagtcttcacggtgggatgaaaggtgcctgtaggcacgttagtactctgacgctca 18135898  T
Q  227 agtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgtgtaccttgagggtgaagcaagttcacccttatatagcgcgcgagtt 325  Q
    ||| |||||||||| |||||||| |||| ||||| ||||||| ||| ||||||| ||||| || |||||||||||||||||||||||||| ||||  |||    
T  18135899 agttagtaatggaactgagaaagagtgtgtaagaagtgttgtcaaaagtgatgtatacctagaaggtgaagcaagttcacccttatatag-gcgcacgtt 18135997  T
Q  326 ggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcg 406  Q
    |||||  || ||| ||  || ||||| || |||||||||| ||  | ||||||||||||||||||||||||||||| ||||    
T  18135998 ggccactactgtctccacgtaatgcgacgtgtgattagggacggtgcaggacacatgtagggtgatccttgcgcgacggcg 18136078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 177 - 398
Target Start/End: Original strand, 29710995 - 29711215
Alignment:
Q  177 ttcgtggtggaacgaaaggtgtctgcaggcacgttagaactcca-cgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gt 274  Q
    |||| |||||||| |||||||| |||| ||||||||| |||||| |||| |||||| |||||||||||| | || |||||   || ||||||||||| ||    
T  29710995 ttcgcggtggaacaaaaggtgtatgcatgcacgttagcactccaacgctcaagtcactaatggaattgaaagagagtgtac--gaagtgttgtgaaaagt 29711092  T
Q  275 gatgtgtaccttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtag 374  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||  |||| | |||||||| ||| ||||||||||  ||||||||| |||  | ||    
T  29711093 gatgtgtaccttgagggtgaagcaagttcacccttatatag-gcgcgcattgggcttaaccgtctccgtgttatgcggcatgtgattaggagcggggaag 29711191  T
Q  375 gacacatgtagggtgatccttgcg 398  Q
    || || ||||| ||||||| ||||    
T  29711192 gatacgtgtagcgtgatccctgcg 29711215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 97 - 400
Target Start/End: Original strand, 29137798 - 29138103
Alignment:
Q  97 gtgagaacggttgagttgcaatagcggcagagaattctccggtgtgacggtaacggctttcggcacggcaacagtgagttttcgtggtggaacgaaaggt 196  Q
    ||||| |||||||||| ||||  ||| ||||||||  |  ||||||| ||||||||||| ||||||||| ||  |||||  ||| ||||||||||||| |    
T  29137798 gtgagtacggttgagtagcaacggcgacagagaatgttttggtgtgatggtaacggcttccggcacggcgacgatgagtcatcgaggtggaacgaaagat 29137897  T
Q  197 gtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgt-gaaagtga-tgtgtaccttgagggtg 293  Q
    ||||||||| ||||||| || || ||||| |||||| ||||| || |||||||| |||| |||||  |||||| ||||||||   ||||||  ||| |||    
T  29137898 gtctgcaggtacgttagcacaccgacgctcaagtcattaatgcaactgagaaagagtgtgtaagaaatgttgtggaaagtgagaatgtaccccgagagtg 29137997  T
Q  294 aagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatcc 393  Q
    |||||||| ||||  ||||| | || || ||||| ||||||| || ||||||||||| ||| |||||||||| || ||||| |||| |||||||| ||||    
T  29137998 aagcaagtccacctctatat-gggcacgcgttggtcataaccatctccgagttatgctgcgtgtgattagggacggagtagtacacgtgtagggtaatcc 29138096  T
Q  394 ttgcgcg 400  Q
    | |||||    
T  29138097 tcgcgcg 29138103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 276 - 486
Target Start/End: Original strand, 19290545 - 19290753
Alignment:
Q  276 atgtgtaccttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtagg 375  Q
    ||||||||||| ||||||||||||||||||||||||||||   |||  | || |||||||||| ||| ||||||| |||  |||||||  ||| |  |||    
T  19290545 atgtgtaccttaagggtgaagcaagttcacccttatatagat-gcgcttgggtcataaccgtctccgggttatgcagcgtatgattagaagcggaa-agg 19290642  T
Q  376 acacatgtagggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgctcccttaaatgtggagtcttaaggtggtgtaa 475  Q
    |||| |||| |  |||||||||||| |||||||||| | ||||  |||||| ||||||||| ||||||||| || ||||||||| ||| |||||||||||    
T  19290643 acacgtgtatgacgatccttgcgcggaggcgcgctcctgtgtggcacggtgcacgcaagattgcgtgctcctttgaatgtggagccttgaggtggtgtaa 19290742  T
Q  476 gtttggccact 486  Q
    ||| |||||||    
T  19290743 gttaggccact 19290753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 97 - 394
Target Start/End: Complemental strand, 10923359 - 10923061
Alignment:
Q  97 gtgagaacggttgagttgcaatagcggcagagaattctccggtgtgacggtaacggctttcggcacggcaacagtgagttttcgtggtggaacgaaaggt 196  Q
    ||||||| |||||||| ||||  |||||||||||| ||| ||||||||||||| ||  | ||| ||||      | ||| |||| |||||||||||||||    
T  10923359 gtgagaatggttgagtggcaactgcggcagagaatgctctggtgtgacggtaatggtctccggaacggtggtgattagtcttcgcggtggaacgaaaggt 10923260  T
Q  197 gtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgtgtaccttgagggtga 294  Q
    || || ||||||||||  ||||| || || |||||||| |||||| | | |||| |||| ||  | ||| ||||||| |||| |||| ||||||||||||    
T  10923259 gtatgtaggcacgttatcactccgacactcaagtcagttatggaacttataaagagtgtgtagaaagtgctgtgaaaagtgaagtgtgccttgagggtga 10923160  T
Q  295 agcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatcct 394  Q
    |||||||||||||||||||| | || | ||||| |||||| |||  ||  |||||||||| |||||||| | || |  ||||||| ||||||||||||||    
T  10923159 agcaagttcacccttatata-cacgtgtgttggtcataacagtcttcggcttatgcggcgtgtgattagagacggaagaggacacgtgtagggtgatcct 10923061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 184 - 393
Target Start/End: Complemental strand, 24157413 - 24157203
Alignment:
Q  184 tggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgtgt 281  Q
    |||||||||||||| || || ||||||||| ||||  ||||| ||||||||||||||| ||||| |    || ||||| ||||||||||| ||  |||||    
T  24157413 tggaacgaaaggtgcctacatgcacgttagcactctgacgctcaagtcagtaatggaactgagagataaagtctaagaagtgttgtgaaaagtattgtgt 24157314  T
Q  282 accttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacat 381  Q
    |||||||||||||||||||||||||||||||||  ||||| ||||||| |||| ||| ||| |||||||||   ||||||||| |||  | ||||||  |    
T  24157313 accttgagggtgaagcaagttcacccttatata-agcgcgtgttggccctaactgtctccgggttatgcggtatgtgattaggagcggggaaggacatgt 24157215  T
Q  382 gtagggtgatcc 393  Q
    |||| |||||||    
T  24157214 gtagcgtgatcc 24157203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 133 - 336
Target Start/End: Original strand, 3586296 - 3586500
Alignment:
Q  133 ctccggtgtgacggtaacggctttcggcacggcaacagtgagttttcgtggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtca 231  Q
    ||||||||||||||| | || || ||| ||||| ||  ||||| || | ||||||| ||||||||  ||| |||||||||| ||||| ||||| ||||||    
T  3586296 ctccggtgtgacggtgaaggtttccggtacggcgacgttgagtctttgcggtggaatgaaaggtgcatgccggcacgttaggactccgacgctcaagtca 3586395  T
Q  232 gtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgtgtaccttgagggtgaagcaagttcacccttatatagcgcgcgagttggcca 330  Q
    ||||||||| |||||||  |||  ||  | ||||||||||| ||||    ||||||||||||||||||||||||||||||||||| ||||| ||||| ||    
T  3586396 gtaatggaactgagaaaaagtgagtagaaagtgttgtgaaaagtgaatcataccttgagggtgaagcaagttcacccttatatag-gcgcgcgttggtca 3586494  T
Q  331 taaccg 336  Q
    ||||||    
T  3586495 taaccg 3586500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 182 - 362
Target Start/End: Original strand, 20120329 - 20120510
Alignment:
Q  182 ggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtga-aagtgatgt 279  Q
    |||||||||||||||||||||||||||||||| ||||| || || |||||||||||| || |||||||| |||| |   | ||| ||||| ||||||       
T  20120329 ggtggaacgaaaggtgtctgcaggcacgttagcactccgactctcaagtcagtaatgaaactgagaaagagtgtgtggaaagtggtgtgataagtgaatc 20120428  T
Q  280 gtaccttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgatta 362  Q
     |||||||||||| || ||||| || |||||||||| | ||| ||||| ||||| |||| |   ||||||||||| |||||||    
T  20120429 ataccttgagggtaaaacaagtccatccttatatag-gtgcgtgttggtcataatcgtctctaggttatgcggcgtgtgatta 20120510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 183 - 315
Target Start/End: Original strand, 36267481 - 36267615
Alignment:
Q  183 gtggaacgaaaggtgtctgcaggcacgttagaactcca-cgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgtg 280  Q
    |||||| |||||||| ||||| ||| ||||  |||||| |||| |||||||||||| || |||||||| |||| ||  | | ||||||||| ||||        
T  36267481 gtggaatgaaaggtgcctgcatgcatgttaacactccaacgctcaagtcagtaatgaaactgagaaagagtgtgtagaaagggttgtgaaaagtgaatca 36267580  T
Q  281 taccttgagggtgaagcaagttcacccttatatag 315  Q
    |||||||||||||||||||||||||||||||||||    
T  36267581 taccttgagggtgaagcaagttcacccttatatag 36267615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 171 - 272
Target Start/End: Original strand, 45714966 - 45715068
Alignment:
Q  171 tgagttttcgtggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg 269  Q
    ||||| ||| |||||||||||||||||  |||||||||||||| ||||| ||||| |||||||||||| || |||||||| |||| ||| | |||| |||    
T  45714966 tgagtcttcctggtggaacgaaaggtgcatgcaggcacgttagcactccaacgctcaagtcagtaatgaaactgagaaagagtgtgtaaaaagtgtggtg 45715065  T
Q  270 aaa 272  Q
    |||    
T  45715066 aaa 45715068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 182 - 299
Target Start/End: Original strand, 12168954 - 12169074
Alignment:
Q  182 ggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgc-taaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg-aaagtgatg 278  Q
    ||||||||||||||||||||||||||| |||  ||||| |||| | ||||||||||||||| | |||||| |||| ||  | |||||||| |||||||      
T  12168954 ggtggaacgaaaggtgtctgcaggcacattaacactccaacgcttcaagtcagtaatggaactaagaaagagtgtgtagaaagtgttgtgaaaagtgaat 12169053  T
Q  279 tgtaccttgagggtgaagcaa 299  Q
    | |||||||||||||||||||    
T  12169054 tataccttgagggtgaagcaa 12169074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 177 - 315
Target Start/End: Complemental strand, 19919180 - 19919040
Alignment:
Q  177 ttcgtggtggaacgaaaggtgtctgcaggcacgttagaactc-cacgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg-aaagt 274  Q
    ||||||||||||||||||||| ||||||| || |||||||||  |||| ||||||| |||||||| |||||||| || | ||  | |||||||| |||||    
T  19919180 ttcgtggtggaacgaaaggtgcctgcaggaacattagaactctaacgccaaagtcaataatggaaatgagaaagagtatgtagaaagtgttgtgaaaagt 19919081  T
Q  275 gatgtgtaccttgagggtgaagcaagttcacccttatatag 315  Q
    ||    |||||||||| ||||||||  |||| |||||||||    
T  19919080 gaatcataccttgaggatgaagcaatatcactcttatatag 19919040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 262 - 315
Target Start/End: Original strand, 18772311 - 18772365
Alignment:
Q  262 gtgttgtgaaa-gtgatgtgtaccttgagggtgaagcaagttcacccttatatag 315  Q
    ||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||    
T  18772311 gtgttgtgaaaagtgacgtgcaccttgagggtgaagcaagttcacccttatatag 18772365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 24318984 - 24319029
Alignment:
Q  270 aaagtgatgtgtaccttgagggtgaagcaagttcacccttatatag 315  Q
    |||||| ||||||| |||||||||||||||||||||||||||||||    
T  24318984 aaagtgttgtgtacattgagggtgaagcaagttcacccttatatag 24319029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 188 - 296
Target Start/End: Complemental strand, 27846622 - 27846512
Alignment:
Q  188 acgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg-aaagtgatgtgtacct 285  Q
    |||||| ||| ||||||||||||||| ||||| ||| | ||||||||||||||| |||||||  || | ||  | |||||||| |||||||  |||||||    
T  27846622 acgaaaagtgcctgcaggcacgttagcactccaacgatcaagtcagtaatggaactgagaaacagtttgtagaaagtgttgtgtaaagtgaattgtacct 27846523  T
Q  286 tgagggtgaag 296  Q
    |||||||||||    
T  27846522 tgagggtgaag 27846512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 315
Target Start/End: Complemental strand, 45258272 - 45258126
Alignment:
Q  171 tgagttttcgtggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg 269  Q
    ||||| |||| ||||||||||||| |||||||||||||||||  ||||| | ||| |||| ||||||| || | ||||||  ||| |   | ||||||||    
T  45258272 tgagtcttcgcggtggaacgaaagatgtctgcaggcacgttaacactccaaagctcaagtaagtaatgaaactaagaaagaatgtgtcgaaagtgttgtg 45258173  T
Q  270 -aaagtgatgtgtaccttgagggtgaagcaagttcacccttatatag 315  Q
     |||||||    |||||||||||||||||||  ||||||||||||||    
T  45258172 aaaagtgaatcataccttgagggtgaagcaaagtcacccttatatag 45258126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 357 - 445
Target Start/End: Complemental strand, 29744035 - 29743947
Alignment:
Q  357 tgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgctc 445  Q
    ||||||||| || || ||||||| |||||||||||||| ||||||  ||||||||   ||||  |||||| ||||||| ||||||||||    
T  29744035 tgattagggacggagcaggacacgtgtagggtgatcctagcgcgagagcgcgctcccgtgtggcacggtgcacgcaagctggcgtgctc 29743947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 213
Target Start/End: Original strand, 17671944 - 17671986
Alignment:
Q  171 tgagttttcgtggtggaacgaaaggtgtctgcaggcacgttag 213  Q
    ||||| ||| |||||||||||||||||||||||| ||||||||    
T  17671944 tgagtcttcatggtggaacgaaaggtgtctgcagacacgttag 17671986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 177 - 237
Target Start/End: Complemental strand, 12127777 - 12127716
Alignment:
Q  177 ttcgtggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatg 237  Q
    |||| ||||| |||||||||  ||||||||||||||| ||||| ||||| ||||||||||||    
T  12127777 ttcgcggtgggacgaaaggtacctgcaggcacgttagcactccaacgctcaagtcagtaatg 12127716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 315
Target Start/End: Original strand, 23257853 - 23257898
Alignment:
Q  270 aaagtgatgtgtaccttgagggtgaagcaagttcacccttatatag 315  Q
    |||||||  ||||||||||||||||| |||| ||||||||||||||    
T  23257853 aaagtgaattgtaccttgagggtgaatcaaggtcacccttatatag 23257898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 181 - 213
Target Start/End: Original strand, 17626882 - 17626914
Alignment:
Q  181 tggtggaacgaaaggtgtctgcaggcacgttag 213  Q
    |||||||||||||||||||||||| ||||||||    
T  17626882 tggtggaacgaaaggtgtctgcagacacgttag 17626914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 184 - 272
Target Start/End: Original strand, 18770296 - 18770387
Alignment:
Q  184 tggaacgaaaggtgtctgca--ggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa 272  Q
    |||||||||||||| || ||  |||||||||| ||||  ||||| |||||||||||| ||||||||||| |||| ||  | |||||||||||    
T  18770296 tggaacgaaaggtgcctacataggcacgttagcactctgacgctcaagtcagtaatgaaattgagaaagagtgtgtagaaagtgttgtgaaa 18770387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 5e-51; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 97 - 485
Target Start/End: Complemental strand, 12731755 - 12731366
Alignment:
Q  97 gtgagaacggttgagttgcaatagcggcagagaattctccggtgtgacggtaacggctttcggcacggcaacagtgagttttcgtggtggaacgaaaggt 196  Q
    |||||||||||||||| |||| |||||||||||||  | |||||||||||||| ||||| |||||||||  |   |||| |||| ||||||||||| |||    
T  12731755 gtgagaacggttgagtagcaacagcggcagagaatgtttcggtgtgacggtaaaggcttccggcacggcggcgaagagtcttcgaggtggaacgaatggt 12731656  T
Q  197 gtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgtgtaccttgagggtga 294  Q
    | || ||  || ||||| ||||| ||||| | |||| |||||||| |||||||| |||||||||| ||||||||||| |||||||| |||||||||||||    
T  12731655 gcctacaaccatgttagtactccgacgctcacgtcattaatggaactgagaaagagtgtataagaagtgttgtgaaaagtgatgtgaaccttgagggtga 12731556  T
Q  295 agcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatcct 394  Q
    ||||||||||||||||||||  | | | | ||| |||||| |||  || ||||||||||| |||||| ||| |  ||||||||||||||| |||||| ||    
T  12731555 agcaagttcacccttatata-tgtgtgcgctggtcataactgtcttcgggttatgcggcgtgtgatttgggacagagtaggacacatgtaaggtgattct 12731457  T
Q  395 tgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgctcccttaaatgtggagtcttaaggtggtgtaagtttggccac 485  Q
     |||||| ||||| ||| | ||||  |||||| | | ||| || |||||||| | ||| | ||||  |||| | |||||| ||||||||||    
T  12731456 cgcgcgagggcgcactcctgtgtggcacggtgcatgtaagctgacgtgctccttcaaaagcggagctttaatgcggtgtatgtttggccac 12731366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 98 - 397
Target Start/End: Original strand, 12516083 - 12516383
Alignment:
Q  98 tgagaacggttgagttgcaatagcggcagagaattctccggtgtgacggtaacggctttcggcacggcaacagtgagttttcgtggtggaacgaaaggtg 197  Q
    ||||||||||||||| |||| ||||| ||||||| || |||||||| || |||| ||| | ||||| | ||  | ||| ||| ||||| |||||||||||    
T  12516083 tgagaacggttgagtggcaacagcggtagagaatgcttcggtgtgatggcaacgacttccagcacgacgacgatcagtcttcatggtgaaacgaaaggtg 12516182  T
Q  198 tctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg-aaagtgatgtgtaccttgagggtgaa 295  Q
     |||||| |||||||| ||||| ||||| |||| |||||||||| ||||||||  ||| ||| | |||||||| |||||||| |||||||||||||||||    
T  12516183 cctgcagacacgttagcactccgacgctcaagttagtaatggaactgagaaagattgtgtaataagtgttgtgaaaagtgatatgtaccttgagggtgaa 12516282  T
Q  296 gcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatcctt 395  Q
    ||||||||||| |||||||| | | |  ||||||||||||||| |||  ||||||| |  |||||||||| || || ||||||| |||||||||||||||    
T  12516283 gcaagttcacctttatatag-gtgtgccttggccataaccgtctccgccttatgcgacatgtgattagggacggagcaggacacgtgtagggtgatcctt 12516381  T
Q  396 gc 397  Q
    ||    
T  12516382 gc 12516383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 177 - 418
Target Start/End: Complemental strand, 14860213 - 14859971
Alignment:
Q  177 ttcgtggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gt 274  Q
    |||||||||||||||||||||  ||||||||| |||| ||||  |  || || |||||||||||| |||||||  || | ||||| ||||||||||| ||    
T  14860213 ttcgtggtggaacgaaaggtgcttgcaggcacattagcactctgattctcaactcagtaatggaactgagaaacagtttgtaagaagtgttgtgaaaagt 14860114  T
Q  275 gatgtgtaccttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtag 374  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||  |  | |||||||||| ||  |||||| ||||  ||||||||| |  || ||    
T  14860113 gatgtgtaccttgagggtgaagcaagttcacccttatatag-gcgcgcttaagtcataaccgtctccaggttatgaggcgtatgattagggacagagcag 14860015  T
Q  375 gacacatgtagggtgatccttgcgcgaaggcgcgctcatatgtg 418  Q
    ||||| |||| |||||||||||||||| ||  ||||| ||||||    
T  14860014 gacacgtgtatggtgatccttgcgcgagggtccgctcctatgtg 14859971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 97 - 471
Target Start/End: Original strand, 25495836 - 25496210
Alignment:
Q  97 gtgagaacggttgagttgcaatagcggcagagaattctccggtgtgacggtaacggctttcggcacggcaacagtgagttttcgtggtggaacgaaaggt 196  Q
    ||||||||  |||||| ||||  ||| ||||||||  |||||||||||||||||||||| ||||||| |     ||| | |||| |||||  || |||||    
T  25495836 gtgagaacaattgagtggcaacggcgacagagaatgttccggtgtgacggtaacggcttccggcacgacggtgatgattcttcgcggtggggcgtaaggt 25495935  T
Q  197 gtctgcaggcacgttagaactccacgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgtgtaccttgagggtgaa 295  Q
    | |||||| |||||||| ||||    || |||||||||||  || |||||||| |||| ||||| | ||||  ||| |||||||||||||| | ||||||    
T  25495936 gcctgcagacacgttagcactctgacctcaagtcagtaatcaaactgagaaagagtgtgtaagaagagttgaaaaaagtgatgtgtaccttaaaggtgaa 25496035  T
Q  296 gcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatcctt 395  Q
    |||||||||||||||||||| ||||  ||||  |||||||||| ||| ||||||||||| |||||||||  ||  ||||||||| ||| || |||||||     
T  25496036 gcaagttcacccttatatag-gcgcacgttgatcataaccgtctccgggttatgcggcgtgtgattaggaacggtgtaggacacgtgttggatgatcctc 25496134  T
Q  396 gcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgctcccttaaatgtggagtcttaaggtggt 471  Q
    || ||  ||||||||| | ||||    |||| | ||||| ||| ||||||||||| |||   ||||||||||||||    
T  25496135 gctcgggggcgcgctcttgtgtggggtggtgcatgcaagctggtgtgctcccttagatgcaaagtcttaaggtggt 25496210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 182 - 365
Target Start/End: Original strand, 1770807 - 1770992
Alignment:
Q  182 ggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatg- 278  Q
    ||||||| |||||||||||||| ||| ||||| ||||| ||||| |||| |||||||||| |||| ||| |||| ||  | ||||||||||| |||||      
T  1770807 ggtggaaggaaaggtgtctgcaagcatgttagtactccgacgctcaagttagtaatggaactgaggaagagtgtgtagaaagtgttgtgaaaagtgatca 1770906  T
Q  279 tgtaccttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggg 365  Q
    ||  |||||||| |||||||||||| ||||||||||| | ||| ||||  |||||||||| |||| ||||||||||  |||||||||    
T  1770907 tgcgccttgaggatgaagcaagttcgcccttatatag-gtgcgcgttgtgcataaccgtctccgaattatgcggcgtatgattaggg 1770992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 171 - 394
Target Start/End: Complemental strand, 431436 - 431212
Alignment:
Q  171 tgagttttcgtggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg 269  Q
    ||||| |||| ||||||| |||||||| || ||| |||||||| ||| | ||||| |||||| |||||||| |||||||| |||  |   | ||| ||||    
T  431436 tgagtcttcgcggtggaaagaaaggtgcctacagacacgttagcacttcgacgctcaagtcaataatggaactgagaaagagtgcgtggaaagtgctgtg 431337  T
Q  270 aaa-gtgatgtgtaccttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcg 368  Q
    ||| ||||  ||| |||||||||||||||| || ||||||||||||| ||||| ||||  |||||| |||  || ||||||| ||| ||||||||||  |    
T  431336 aaaagtgaattgtcccttgagggtgaagcatgtccacccttatatag-gcgcgtgttgctcataactgtctgcgggttatgcagcgtgtgattagggatg 431238  T
Q  369 aagtaggacacatgtagggtgatcct 394  Q
     || ||||||| |||| |||||||||    
T  431237 gaggaggacacgtgtaaggtgatcct 431212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 183 - 315
Target Start/End: Complemental strand, 9801191 - 9801058
Alignment:
Q  183 gtggaacgaaaggtgtctgcaggcacgttagaactccacgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg-aaagtgatgtgt 281  Q
    ||||||||||||||| ||||| ||||||||| |||| || || ||||||||||| |||  ||||||| |||| ||  | |||||||| |||||||    |    
T  9801191 gtggaacgaaaggtgcctgcaagcacgttagcactcaacactcaagtcagtaatagaacagagaaagagtgtgtagaaagtgttgtgaaaagtgaatcat 9801092  T
Q  282 accttgagggtgaagcaagttcacccttatatag 315  Q
    ||||||||||||||||||  ||||||||||||||    
T  9801091 accttgagggtgaagcaatgtcacccttatatag 9801058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 279 - 365
Target Start/End: Original strand, 12108500 - 12108585
Alignment:
Q  279 tgtaccttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggg 365  Q
    ||||||||||||||||||||||||||||||||||||| || || ||||| |||||| | | ||| ||||||||||  ||||||||||    
T  12108500 tgtaccttgagggtgaagcaagttcacccttatatag-gcacgcgttggtcataacggcctccgggttatgcggcttgtgattaggg 12108585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 220 - 336
Target Start/End: Original strand, 16704423 - 16704539
Alignment:
Q  220 acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgtgtaccttgagggtgaagcaagttcacccttatatagcgc 318  Q
    ||||| |||||||||||||| ||||||||| | || ||  | ||||||||||| ||||    ||||||||||||||||||||||||||||||||||| ||    
T  16704423 acgctgaagtcagtaatggagttgagaaagagagtgtagaaagtgttgtgaaaagtgaatcataccttgagggtgaagcaagttcacccttatatag-gc 16704521  T
Q  319 gcgagttggccataaccg 336  Q
    ||| |||||  |||||||    
T  16704522 gcgcgttggtgataaccg 16704539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 269 - 393
Target Start/End: Complemental strand, 20122799 - 20122676
Alignment:
Q  269 gaaagtgatgtgtaccttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcg 368  Q
    ||||||| |||||||||||||||||||| |||||||||||||||||| |||||  |  |  ||||||||| ||| |||||||||||  |||||| | ||     
T  20122799 gaaagtgttgtgtaccttgagggtgaagaaagttcacccttatatag-gcgcgcttatggaataaccgtctccgggttatgcggcgtatgattaagagcc 20122701  T
Q  369 aagtaggacacatgtagggtgatcc 393  Q
      | ||||||||||||| |||||||    
T  20122700 gggaaggacacatgtagtgtgatcc 20122676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 411
Target Start/End: Original strand, 12256952 - 12257039
Alignment:
Q  324 ttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcgcgctc 411  Q
    |||||||||||||||  |||||||||||||| |||||||||| ||||  |  |||| ||||| |||| |||||||||| |||||||||    
T  12256952 ttggccataaccgtcttcgagttatgcggcgtgtgattagggacgaaacataacacgtgtagtgtgacccttgcgcgatggcgcgctc 12257039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 171 - 394
Target Start/End: Complemental strand, 17485744 - 17485522
Alignment:
Q  171 tgagttttcgtggtggaacgaaaggtgtctgcaggcacgttagaactcca-cgctaaagtcagtaatggaattgagaaagcgtgtata-agacgtgttgt 268  Q
    ||||| |||| ||||||||||||||||||||  ||||| |||| || ||| |||| |||||||||||||||||||||| | |||| || |||  ||||||    
T  17485744 tgagtcttcgcggtggaacgaaaggtgtctgtgggcacattagcaccccaacgctcaagtcagtaatggaattgagaaggagtgtgtagaga-atgttgt 17485646  T
Q  269 g-aaagtgatgtgtaccttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggc 367  Q
    | ||| |||   ||||||||||||||||||||  |||  | | ||||| ||||| ||||| ||||| |||| ||| ||||||| ||| |||||||| | |    
T  17485645 gtaaaatgaatagtaccttgagggtgaagcaaaatca--cgtgtatag-gcgcgcgttggtcataatcgtctccgggttatgctgcgtgtgattagtgac 17485549  T
Q  368 gaagtaggacacatgtagggtgatcct 394  Q
    |||  | ||||| ||||||| ||||||    
T  17485548 gaaagatgacacgtgtagggcgatcct 17485522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 277 - 315
Target Start/End: Complemental strand, 20118989 - 20118951
Alignment:
Q  277 tgtgtaccttgagggtgaagcaagttcacccttatatag 315  Q
    |||||||||||||||||||||||||||||||||||||||    
T  20118989 tgtgtaccttgagggtgaagcaagttcacccttatatag 20118951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 172 - 311
Target Start/End: Complemental strand, 2311953 - 2311812
Alignment:
Q  172 gagttttcgtggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtga 270  Q
    |||| |||||||||||| |||||||||||||||  ||||||| ||||| ||||| || |||| || ||| |||||||||  ||| ||  | |||||||||    
T  2311953 gagtcttcgtggtggaatgaaaggtgtctgcagatacgttagcactccaacgctcaaatcagcaagggatttgagaaagaatgtgtagaaagtgttgtga 2311854  T
Q  271 aa-gtgatgtgtaccttgagggtgaagcaagttcacccttat 311  Q
    || ||||    |||||||||||||||||||  ||||||||||    
T  2311853 aaggtgaatcataccttgagggtgaagcaatgtcacccttat 2311812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 17396796 - 17396840
Alignment:
Q  271 aagtgatgtgtaccttgagggtgaagcaagttcacccttatatag 315  Q
    ||||| |||||||||||||||||||||| ||||||||||||||||    
T  17396796 aagtgttgtgtaccttgagggtgaagcatgttcacccttatatag 17396840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 315
Target Start/End: Original strand, 30606949 - 30607045
Alignment:
Q  220 acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg-aaagtgatgtgtaccttgagggtgaagcaagttcacccttatatag 315  Q
    ||||| |||||||||||||||||||||||| |||  ||  | |||||||| |||||||  | |||||||||||||||| |||  |||||||||||||    
T  30606949 acgctcaagtcagtaatggaattgagaaagagtgagtagaaagtgttgtgaaaagtgaattataccttgagggtgaagtaaggccacccttatatag 30607045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 203 - 314
Target Start/End: Complemental strand, 17143837 - 17143724
Alignment:
Q  203 aggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg-aaagtgatgtgtaccttgagggtgaagcaag 300  Q
    ||||||||||| ||||| ||||| ||||||||||||||| |||||||| |||| ||  | |||||||| |||||||    ||||||| ||||||| |||     
T  17143837 aggcacgttagcactccgacgctcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaatcataccttgggggtgaaacaac 17143738  T
Q  301 ttcacccttatata 314  Q
     |||||||||||||    
T  17143737 atcacccttatata 17143724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 281 - 314
Target Start/End: Original strand, 20622491 - 20622524
Alignment:
Q  281 taccttgagggtgaagcaagttcacccttatata 314  Q
    ||||||||||||||||||||||||||||||||||    
T  20622491 taccttgagggtgaagcaagttcacccttatata 20622524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 171 - 246
Target Start/End: Original strand, 21649384 - 21649460
Alignment:
Q  171 tgagttttcgtggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgaga 246  Q
    ||||| |||| |||||||||||||||| ||||| ||||||||| || || ||| | ||||||||||||||| |||||    
T  21649384 tgagtcttcgcggtggaacgaaaggtgcctgcaagcacgttagcaccccaacgatcaagtcagtaatggaactgaga 21649460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 244
Target Start/End: Complemental strand, 8123015 - 8122960
Alignment:
Q  190 gaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattga 244  Q
    ||||||||| |||||||||||||| ||||| ||||| |||||||||||| ||||||    
T  8123015 gaaaggtgtatgcaggcacgttagcactccaacgctcaagtcagtaatgaaattga 8122960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 315
Target Start/End: Complemental strand, 21342396 - 21342261
Alignment:
Q  182 ggtggaacgaaaggtgtctgcaggcacgttagaact-ccacgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg-aaagtgatgt 279  Q
    ||||| ||||||||| | |||||||||||||  | | | ||||| ||||||||||||||| ||| |||| |||||||  | |||||||| |||||||       
T  21342396 ggtgggacgaaaggtatatgcaggcacgttaacagtacaacgctcaagtcagtaatggaactgataaagagtgtatagaaagtgttgtgaaaagtgaatc 21342297  T
Q  280 gtaccttgagggtgaagcaagttcacccttatatag 315  Q
     ||| |||||||||||| ||| | ||||||||||||    
T  21342296 atacattgagggtgaagtaaggttacccttatatag 21342261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 186 - 449
Target Start/End: Complemental strand, 23728925 - 23728661
Alignment:
Q  186 gaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgtgtac 283  Q
    ||||||||||||  |||||||||||||| | |   ||||| |||||| |||||||| |||||||| |||| ||||| ||||||||||| |||||||||||    
T  23728925 gaacgaaaggtggatgcaggcacgttagcattatgacgctcaagtcattaatggaaatgagaaagagtgtgtaagaagtgttgtgaaaagtgatgtgtac 23728826  T
Q  284 cttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgt 383  Q
    |||||||||||| ||||||||||||||||||| ||||  ||||||||||||||||  | | |||||||||  |||||||||| |  || ||||||| |||    
T  23728825 cttgagggtgaaacaagttcacccttatatag-gcgcacgttggccataaccgtcttcaaattatgcggcatgtgattagggacagagcaggacacgtgt 23728727  T
Q  384 agggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgctccctt 449  Q
    |||||||||||| || |||||||| ||| | ||||  ||| || ||||||| ||| ||||||||||    
T  23728726 agggtgatccttccgtgaaggcgcactcctgtgtgacacgatgcacgcaagctggtgtgctccctt 23728661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 97 - 381
Target Start/End: Complemental strand, 4601681 - 4601396
Alignment:
Q  97 gtgagaacggttgagttgcaatagcggcagagaattctccggtgtgacggtaacggctttcggcacggcaacagtgagttttcgtggtggaacgaaaggt 196  Q
    |||||||||||||||| ||||  | |||||| ||| ||| |||||||||||||  | || ||||| |||  |  | ||| |||| |||||||||||||||    
T  4601681 gtgagaacggttgagtagcaacggtggcagaaaatgctctggtgtgacggtaattgtttccggcatggcggcgataagtcttcgcggtggaacgaaaggt 4601582  T
Q  197 gtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaagt-gatgtgtaccttgagggtga 294  Q
    | ||||||||||||||| ||||| ||||| |||||||||||| || |||||||   ||| ||| | ||| ||||||| | ||||||| ||||||||||||    
T  4601581 gactgcaggcacgttagcactccgacgctcaagtcagtaatgaaactgagaaataatgtgtaataagtgctgtgaaatttgatgtgtcccttgagggtga 4601482  T
Q  295 agcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacat 381  Q
    |||||||||||||||||||| ||||||  |||| |||| ||||| ||| |||||||| || ||||||||| ||| ||||||||||||    
T  4601481 agcaagttcacccttatata-cgcgcgcattggtcatagccgtctccgggttatgcgccgtgtgattaggtgcggagtaggacacat 4601396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 96 - 485
Target Start/End: Complemental strand, 14255225 - 14254847
Alignment:
Q  96 agtgagaacggttgagttgcaatagcggcagagaattctccggtgtgacggtaacggctttcggcacggcaacagtgagttttcgtggtggaacgaaagg 195  Q
    ||||||||||||||||| ||||  |||||||||||| ||||||||||||||||| ||||| |||| ||||  |  ||||| |||||||||||||||| ||    
T  14255225 agtgagaacggttgagtagcaacggcggcagagaatgctccggtgtgacggtaatggcttccggcgcggcggcgatgagtcttcgtggtggaacgaaggg 14255126  T
Q  196 tgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaagtgatgtgtaccttgagggtga 294  Q
    || ||||| ||||| ||| ||||| ||||| |||||| ||||| || |||||||| |||| ||||           ||||| ||||||||||||||||||    
T  14255125 tgcctgcaagcacgatagcactccaacgctcaagtcattaatgaaactgagaaagagtgtgtaag-----------aagtgttgtgtaccttgagggtga 14255037  T
Q  295 agcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatcct 394  Q
    | ||||||||||||||||||| || ||  |||| ||||||  || ||  |||||||||||  ||||||||| |  ||| |||||  ||||||||||||||    
T  14255036 aacaagttcacccttatatag-gcacgctttggtcataactttctccaggttatgcggcgtatgattagggacagagttggacatgtgtagggtgatcct 14254938  T
Q  395 tgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgctcccttaaatgtggagtcttaaggtggtgtaagtttggccac 485  Q
     ||||||  ||| |||| | ||||  |||||| ||||||| ||| || |||  |||||||   || |||||   |||||||||||||||||    
T  14254937 cgcgcgatagcgtgctcctgtgtggcacggtgcacgcaagctggtgtactcttttaaatgcaaagccttaaaacggtgtaagtttggccac 14254847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 182 - 451
Target Start/End: Original strand, 25408078 - 25408348
Alignment:
Q  182 ggtggaacgaaaggtgtctgcaggcacgttagaactccac-gctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgt 279  Q
    ||||||| |||||||| |||||| |||||||| ||||||  ||| |||||||||||| || ||| | || |||| ||||| ||||||||||| |||||||    
T  25408078 ggtggaatgaaaggtgcctgcagacacgttagcactccaatgctcaagtcagtaatgaaactgaaagagagtgtgtaagaagtgttgtgaaaagtgatgt 25408177  T
Q  280 gtaccttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacac 379  Q
    || |||||||||||||||||||||||||||  |||| ||| |  |||  |||||| ||| ||| |||||  |||| ||||||||  |||  | ||||||     
T  25408178 gtcccttgagggtgaagcaagttcaccctttcatag-gcgtgttttgttcataactgtctccgggttataaggcgtgtgattagaagcggggaaggacat 25408276  T
Q  380 atgtagggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgctcccttaa 451  Q
     |||||  ||||||||||| | ||||| |||| | ||||  |||||| | ||||| ||||||||||||||||    
T  25408277 gtgtagcatgatccttgcgaggaggcgtgctcctctgtggcacggtgcaggcaagctggcgtgctcccttaa 25408348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 97 - 453
Target Start/End: Complemental strand, 16299767 - 16299420
Alignment:
Q  97 gtgagaacggttgagttgcaatagcggcagagaattctccggtgtgacggtaacggctttcggcacggcaacagtgagttttcgtggtggaacgaaaggt 196  Q
    |||||||| ||||||| |||| ||||| ||||||| ||||||||| || |||||| ||| ||  |||||  |  ||||| || | |||||||||||| ||    
T  16299767 gtgagaacagttgagtggcaacagcggtagagaatgctccggtgttaccgtaacgacttccgatacggcggcgatgagtctt-gcggtggaacgaaacgt 16299669  T
Q  197 gtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaag-tgatgtgtaccttgagggtga 294  Q
    ||||||| |||| |||| ||||| ||| | |||| ||||||| || |||||||| |||  ||||| |||||||||||  |||||||||| |       ||    
T  16299668 gtctgcatgcacattagcactccgacgttcaagtaagtaatgaaactgagaaagagtgcgtaagaagtgttgtgaaaaatgatgtgtacat-------ga 16299576  T
Q  295 agcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatcct 394  Q
    |||||||||||||||||||||  || | ||||||||||| ||||  || ||||||||||| || ||||| | || || |||||||| |||||||||||||    
T  16299575 agcaagttcacccttatataga-cgtgtgttggccataatcgtc--cgggttatgcggcgtgtaattagagacggagcaggacacaagtagggtgatcct 16299479  T
Q  395 tgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgctcccttaaat 453  Q
      |||| || ||||||| | |||  ||| ||| || | ||||||||| || ||||||||    
T  16299478 cacgcgtagacgcgctcttgtgttgtacagtgcacacgagatggcgtacttccttaaat 16299420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 182 - 391
Target Start/End: Original strand, 12177368 - 12177578
Alignment:
Q  182 ggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg-aaagtgatgt 279  Q
    |||||||||||||||| || || ||||||||| ||||| || || ||||||||||||||| |||||||| |||| ||  | |||||||| |||||||  |    
T  12177368 ggtggaacgaaaggtgcctacatgcacgttagcactccgacactcaagtcagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaatt 12177467  T
Q  280 gtaccttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacac 379  Q
     ||||||||||  |||||||||||| |||||||||| | |||  |||| |||||| ||| ||||||||||||||   |||||||||  |  | |||||||    
T  12177468 ataccttgaggaggaagcaagttcaaccttatatag-gtgcgcattgggcataactgtctccgagttatgcggcatttgattagggatggtggaggacac 12177566  T
Q  380 atgtagggtgat 391  Q
     |||||||||||    
T  12177567 gtgtagggtgat 12177578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 182 - 315
Target Start/End: Complemental strand, 21098954 - 21098820
Alignment:
Q  182 ggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattga--gaaagcgtgtataagacgtgttgtgaaa-gtgat 277  Q
    |||||||||||||||| |||||||||| |||| ||||| ||| | ||||||||||||||| |||  ||||    |||| | | ||||| ||||| ||| |    
T  21098954 ggtggaacgaaaggtggctgcaggcacattagcactccgacgatcaagtcagtaatggaactgatagaaaa---gtattataagtgttatgaaaagtgtt 21098858  T
Q  278 gtgtaccttgagggtgaagcaagttcacccttatatag 315  Q
    ||||||||||||||||||||||||||||||||||||||    
T  21098857 gtgtaccttgagggtgaagcaagttcacccttatatag 21098820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 182 - 315
Target Start/End: Original strand, 26977722 - 26977857
Alignment:
Q  182 ggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg-aaagtgatgt 279  Q
    |||||||||||||||| ||||||||||||||| ||||| ||||| |||||||||||||||  ||||||| |||| ||  | || ||||| ||| |||       
T  26977722 ggtggaacgaaaggtgcctgcaggcacgttagcactccaacgctcaagtcagtaatggaaccgagaaagagtgtgtagaaagtattgtgaaaaatgaatc 26977821  T
Q  280 gtaccttgagggtgaagcaagttcacccttatatag 315  Q
     ||||||||||||||||||| || ||||||||||||    
T  26977822 ataccttgagggtgaagcaatttgacccttatatag 26977857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 171 - 365
Target Start/End: Original strand, 52565551 - 52565744
Alignment:
Q  171 tgagttttcgtggtggaacgaaaggtgtctgcaggcacgttagaactc-cacgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg 269  Q
    |||||||||||| |||||||||||||| |||||| |||||||| ||||  ||||| |||||||||| |||| ||| |||| |||   |  | ||||||||    
T  52565551 tgagttttcgtgatggaacgaaaggtgcctgcagacacgttagcactctgacgctcaagtcagtaaaggaactgaaaaagagtgcgcagaaagtgttgtg 52565650  T
Q  270 -aaagtgatgtgtaccttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggg 365  Q
     |||||||    || ||||||||||||||||||||| |||||||| |   ||| ||||| ||||| |||| ||||||||||| ||  ||||||||||    
T  52565651 aaaagtgaatcataacttgagggtgaagcaagttcatccttatattg---gcgtgttggtcataatcgtctccgagttatgcagcatgtgattaggg 52565744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 315
Target Start/End: Complemental strand, 1659898 - 1659763
Alignment:
Q  182 ggtggaacgaaaggtgtctgcaggcacgttagaactcca-cgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgt 279  Q
    ||||||||||||||||||| ||  |||||||  |||||| |||| |||||| |||||||  ||||||||  ||| ||||| ||||||||||| ||||       
T  1659898 ggtggaacgaaaggtgtctacatacacgttatcactccaacgctcaagtcaataatggatctgagaaagaatgtgtaagaagtgttgtgaaaagtgagaa 1659799  T
Q  280 gtaccttgagggtgaagcaagttcacccttatatag 315  Q
     || |||| ||||| |||||||||||||||||||||    
T  1659798 atatcttgtgggtggagcaagttcacccttatatag 1659763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 183 - 315
Target Start/End: Complemental strand, 21682698 - 21682564
Alignment:
Q  183 gtggaacgaaaggtgtctgcaggcacgttagaactcca-cgctaaagtcagtaatggaattgagaa-agcgtgtataagacgtgttgtg-aaagtgatgt 279  Q
    ||||||||||||||| ||  ||| ||||| | |||||| |||| ||||||||||||||| | |||| || |||| |||||  | ||||| ||||| ||||    
T  21682698 gtggaacgaaaggtgcctataggtacgtttgcactccaacgctcaagtcagtaatggaact-agaagagagtgtgtaagaaatattgtgaaaagtaatgt 21682600  T
Q  280 gtaccttgagggtgaagcaagttcacccttatatag 315  Q
    ||||||||||||||| |||| |||||||||||||||    
T  21682599 gtaccttgagggtgacgcaaattcacccttatatag 21682564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 271 - 364
Target Start/End: Original strand, 48637612 - 48637704
Alignment:
Q  271 aagtgatgtgtaccttgagggtgaagcaagttcacccttatata-gcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattagg 364  Q
    ||||| ||||||||||||||||||| |||||||||||||||||| ||| ||  ||  | |||||||||| ||| ||||||||||| |||||||||    
T  48637612 aagtgttgtgtaccttgagggtgaaacaagttcacccttatataggcgggctcgt--ggcataaccgtctccgtgttatgcggcgtgtgattagg 48637704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 182 - 313
Target Start/End: Original strand, 18246125 - 18246257
Alignment:
Q  182 ggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaagtgatgtg 280  Q
    |||||||||||||||||||| | ||||||||  ||||| ||||| |||| |||| | |||||||||||| |||||||| | ||||    ||||||||       
T  18246125 ggtggaacgaaaggtgtctgtaagcacgttaacactccaacgctcaagtgagtattagaattgagaaagagtgtataaaaagtgtgagaaaagtgattca 18246224  T
Q  281 taccttgagggtgaagcaagttcacccttatat 313  Q
    ||||||||||||||||  |  ||||||||||||    
T  18246225 taccttgagggtgaagataagtcacccttatat 18246257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 184 - 315
Target Start/End: Original strand, 3590811 - 3590944
Alignment:
Q  184 tggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgaga-aagcgtgtataagacgtgttgtgaaa-gtgatgtg 280  Q
    ||||||||||||||  ||||||||| |||| ||||| ||| | ||||||||||||||| ||||| ||  || | || || | ||||||||| ||| ||||    
T  3590811 tggaacgaaaggtgcatgcaggcaccttagcactccgacgatcaagtcagtaatggaactgagagaaaagtct-tagga-gagttgtgaaaagtgttgtg 3590908  T
Q  281 tacctt-gagggtgaagcaagttcacccttatatag 315  Q
    |||||| |||||||||||||||||||||||||||||    
T  3590909 tacctttgagggtgaagcaagttcacccttatatag 3590944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 182 - 315
Target Start/End: Original strand, 22414757 - 22414892
Alignment:
Q  182 ggtggaacgaaaggtgtctgcaggcacgttagaactc-cacgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg-aaagtgatgt 279  Q
    |||||||||||||||| | ||||||||||||| ||||  ||||| |||||||||||| || ||| |||  |||| ||  | |||||||| |||||||       
T  22414757 ggtggaacgaaaggtgcccgcaggcacgttagcactctgacgctcaagtcagtaatgaaactgaaaaaaagtgtgtagaaagtgttgtgaaaagtgaatc 22414856  T
Q  280 gtaccttgagggtgaagcaagttcacccttatatag 315  Q
     || ||||||||||||||||||||| |||| |||||    
T  22414857 atatcttgagggtgaagcaagttcatccttgtatag 22414892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 182 - 315
Target Start/End: Original strand, 34273069 - 34273204
Alignment:
Q  182 ggtggaacgaaaggtgtctgcaggcacgttagaactccac-gctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg-aaagtgatgt 279  Q
    ||||| |||||||||  ||||| ||||||||| ||||||  ||| |||||||||| |||| |||||||| |||| ||  | |||||||| |||||||       
T  34273069 ggtgggacgaaaggtacctgcaagcacgttagcactccaatgctcaagtcagtaacggaactgagaaagagtgtgtagaaagtgttgtgtaaagtgactc 34273168  T
Q  280 gtaccttgagggtgaagcaagttcacccttatatag 315  Q
     |||||||||||||||||||  || |||||||||||    
T  34273169 ataccttgagggtgaagcaatgtcgcccttatatag 34273204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 171 - 315
Target Start/End: Original strand, 16050365 - 16050511
Alignment:
Q  171 tgagttttcgtggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg 269  Q
    ||||| |||| ||||||  ||||||| |||||||||||||||| ||||| ||||| |||||| | |||||| |||||||| |||| ||  | |||| |||    
T  16050365 tgagtcttcgcggtggatagaaaggtatctgcaggcacgttagcactccaacgctcaagtcattgatggaactgagaaagagtgtgtagaaagtgtggtg 16050464  T
Q  270 -aaagtgatgtgtaccttgagggtgaagcaagttcacccttatatag 315  Q
     |||||||    |||||||||| ||||||||   |||||||||||||    
T  16050465 aaaagtgaaccataccttgaggatgaagcaatgccacccttatatag 16050511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 272
Target Start/End: Original strand, 5671761 - 5671843
Alignment:
Q  191 aaaggtgtctgcaggcacgttagaactcca-cgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa 272  Q
    |||||||| || ||||||||||| |||||| |||| |||| |||||||||| |||||||| |||| ||  | |||||||||||    
T  5671761 aaaggtgtttgtaggcacgttagcactccaacgctcaagttagtaatggaactgagaaagagtgtgtagaaagtgttgtgaaa 5671843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 184 - 249
Target Start/End: Original strand, 16522759 - 16522825
Alignment:
Q  184 tggaacgaaaggtgtctgcaggcacgttagaac-tccacgctaaagtcagtaatggaattgagaaag 249  Q
    |||||||||||||||||| ||||||||||| || || ||| | |||||| ||| |||||||||||||    
T  16522759 tggaacgaaaggtgtctgaaggcacgttagcacttcaacgttcaagtcaataaaggaattgagaaag 16522825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 29217710 - 29217657
Alignment:
Q  98 tgagaacggttgagttgcaatagcggcagagaattctccggtgtgacggtaacg 151  Q
    ||||||| ||||| | ||||  |||||||||||| |||||||||||||||||||    
T  29217710 tgagaacagttgaatggcaacggcggcagagaatgctccggtgtgacggtaacg 29217657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 171 - 234
Target Start/End: Original strand, 8018920 - 8018984
Alignment:
Q  171 tgagttttcgtggtggaacgaaaggtgtctgcaggcacgttagaact-ccacgctaaagtcagta 234  Q
    ||||| |||||||||| ||||||||| ||| |||||||||||| ||| | ||||| |||||||||    
T  8018920 tgagtcttcgtggtgggacgaaaggtatctacaggcacgttagcactacgacgctcaagtcagta 8018984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0380 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 137 - 411
Target Start/End: Complemental strand, 7014 - 6739
Alignment:
Q  137 ggtgtgacggtaacggctttcggcacggcaacagtgagttttcgtggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaa 235  Q
    ||||||||||||||||||| |||||||||  |  ||||| |||||||||||||||||| ||   | |||||||||||  |||  ||||| |||||||||     
T  7014 ggtgtgacggtaacggcttccggcacggcgccgatgagtcttcgtggtggaacgaaagatgctggtaggcacgttaggtctctgacgctcaagtcagtat 6915  T
Q  236 tggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgtgtaccttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataac 334  Q
    || || |||||| | |||| ||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||| ||||  ||||||||||||    
T  6914 tgaaactgagaacgagtgtgtaagaagtgttgtgaaaagtgatgtgtaccttgagggtgaaacaagttcacccttgtatag-gcgcacgttggccataac 6816  T
Q  335 cgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatccttgcgcgaaggcgcgctc 411  Q
    |||| ||  ||||||||||| ||||||||||  | |  ||||||||||||||   |||||||| | |||||||||||    
T  6815 cgtctccaggttatgcggcgtgtgattagggatggatcaggacacatgtaggtcaatccttgcacaaaggcgcgctc 6739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 183 - 485
Target Start/End: Original strand, 22869 - 23172
Alignment:
Q  183 gtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgtg 280  Q
    |||| |||||||||| |||| |||||||||| ||||  ||||| ||||||||||||||| ||||||| ||||| ||||| ||||||||||| |||| |||    
T  22869 gtgggacgaaaggtgcctgcgggcacgttagcactctgacgctcaagtcagtaatggaactgagaaatcgtgtgtaagaagtgttgtgaaaagtgacgtg 22968  T
Q  281 taccttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacaca 380  Q
    ||||||||||||||||||||||||||||||| ||| | ||| |||||  |||||| || ||  ||||||||| | |||||||||| || || ||||||      
T  22969 taccttgagggtgaagcaagttcacccttatgtag-gtgcgcgttggtgataaccctctccaggttatgcggtgtgtgattagggacggagcaggacatg 23067  T
Q  381 tgtagggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgctcccttaaatgtggagtcttaaggtggtgtaagtttg 480  Q
    |||||||| ||||||| |||| ||||| ||||| ||    ||||   | ||||| ||||||||||| ||   ||||||||||||||| |||| |||| ||    
T  23068 tgtagggtaatccttgagcgagggcgcactcatgtgcagaacggaccatgcaagctggcgtgctcctttgggtgtggagtcttaaggcggtgcaagtctg 23167  T
Q  481 gccac 485  Q
    |||||    
T  23168 gccac 23172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 86 - 315
Target Start/End: Complemental strand, 11120 - 10889
Alignment:
Q  86 tgatctattcagtgagaacggttgagttgcaatagcggcagagaattctccggtgtgacggtaacggctttcggcacggcaacagtgagttttcgtggtg 185  Q
    |||||||| | |||||||||||||||| ||||  | |||| ||||| ||||| || | |||||||| ||| ||| |||||  |  ||| | |  | ||||    
T  11120 tgatctatccggtgagaacggttgagtcgcaacggtggcaaagaatgctccgatgagtcggtaacgacttccggtacggcggcgatgaatctctgcggtg 11021  T
Q  186 gaacgaaaggtgtctgcaggcacgttagaactcca-cgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgtgtac 283  Q
    |||| |||||||| |||||||||||||| |||||| |||| |||||| |||||||| ||| | || |||| ||||| ||||||||||| |||||||||||    
T  11020 gaacaaaaggtgtatgcaggcacgttagcactccaacgctcaagtcaataatggaactgaaagagagtgtgtaagaagtgttgtgaaaagtgatgtgtac 10921  T
Q  284 cttgagggtgaagcaagttcacccttatatag 315  Q
    |||||||||||| |||||||||| ||||||||    
T  10920 cttgagggtgaaacaagttcacctttatatag 10889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 186 - 485
Target Start/End: Original strand, 215258 - 215558
Alignment:
Q  186 gaacgaaaggtgtctgcaggcacgttagaactcca-cgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgtgtac 283  Q
    ||||||||| |||||||||||||||||| | |||| |||| |||||||||||| || ||| | || |||| ||||| ||||||||||| ||| |||||||    
T  215258 gaacgaaagttgtctgcaggcacgttagcaatccaacgctcaagtcagtaatgaaactgaaagagagtgtgtaagaagtgttgtgaaaagtgttgtgtac 215357  T
Q  284 cttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgt 383  Q
    ||||||||||||||||||||| ||||||||||| || | ||||  |||||| ||| ||| ||||||||||| ||||||||| |||  | ||||||| |||    
T  215358 cttgagggtgaagcaagttcatccttatatagc-cgtgtgttgatcataactgtctccgggttatgcggcgtgtgattaggagcggggaaggacacgtgt 215456  T
Q  384 agggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgctcccttaaatgtggagtcttaaggtggtgtaagtttggcc 483  Q
    | || ||||| | || | ||| | |||  | || |  |||||| ||||||| ||||||||||| || | || |||||| ||||| |||||||||| ||||    
T  215457 aaggcgatccctacgaggaggtgtgcttctgtgaggcacggtgcacgcaagctggcgtgctcctttgagtgcggagtcgtaaggaggtgtaagttaggcc 215556  T
Q  484 ac 485  Q
    ||    
T  215557 ac 215558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 97 - 406
Target Start/End: Original strand, 11413 - 11719
Alignment:
Q  97 gtgagaacggttgagttgcaatagcggcagagaattctccggtgtgacggtaacggctttcggcacggcaacagtgagttttcgtggtggaacgaaaggt 196  Q
    |||||||||||||||| |||| |||||||||||||  | | |||||||||||| |||||  ||||||||  |   |||| |||  ||||||||||| |||    
T  11413 gtgagaacggttgagtagcaacagcggcagagaatgtttctgtgtgacggtaaaggcttctggcacggcggcgaagagtcttcaaggtggaacgaatggt 11512  T
Q  197 gtctgcaggcacgttagaactcca-cgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgtgtaccttgagggtga 294  Q
    | || ||  || ||||| |||||| |||| |  ||| |||||||| |||||||| |||||||||   |||||||||| |||||||| |||||||||||||    
T  11513 gcctacaaccatgttagcactccaacgctcacctcattaatggaactgagaaagagtgtataag---tgttgtgaaaagtgatgtg-accttgagggtga 11608  T
Q  295 agcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatcct 394  Q
    | ||||||||||||||||||  | | | | ||| |||||| |||  || ||||||||||| |||||| ||| || ||||||||||||||| |||||| ||    
T  11609 accaagttcacccttatata-tgtgtgcgctggtcataactgtcttcgggttatgcggcgtgtgatttgggacggagtaggacacatgtaaggtgattct 11707  T
Q  395 tgcgcgaaggcg 406  Q
     |||||| ||||    
T  11708 cgcgcgagggcg 11719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 66; Significance: 6e-29; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 180 - 315
Target Start/End: Complemental strand, 4535 - 4398
Alignment:
Q  180 gtggtggaacgaaaggtgtctgcaggcacgttagaactcca-cgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaag-tgat 277  Q
    |||||||||||||||||||||||| ||||||||| |||||| |||| |||||| ||||| || ||| | || | || ||||| ||||| |||||  ||||    
T  4535 gtggtggaacgaaaggtgtctgcaagcacgttagcactccaacgctcaagtcactaatgaaactgaaagagagagtgtaagaagtgttatgaaaaatgat 4436  T
Q  278 gtgtaccttgagggtgaagcaagttcacccttatatag 315  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4435 gtgtaccttgagggtgaagcaagttcacccttatatag 4398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 6e-29; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 183 - 378
Target Start/End: Complemental strand, 24576691 - 24576495
Alignment:
Q  183 gtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgtg 280  Q
    ||||||||||||||| ||||||||||||||  ||||  ||||| ||||||||||||||| | | || | |||| ||||| ||||||||||| || |||||    
T  24576691 gtggaacgaaaggtgcctgcaggcacgttaacactctgacgctcaagtcagtaatggaactaaaaatgagtgtgtaagaagtgttgtgaaaagtaatgtg 24576592  T
Q  281 taccttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggaca 378  Q
    |||||||||||||||| |||||||||||||||||| || || ||||  |||||||| | ||  |||||||| || ||||||||| ||| || ||||||    
T  24576591 taccttgagggtgaaggaagttcacccttatatag-gcacgcgttgatcataaccgcctccaggttatgcgacgtgtgattaggagcggagaaggaca 24576495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 122 - 362
Target Start/End: Original strand, 21416660 - 21416901
Alignment:
Q  122 ggcagagaattctccggtgtgacggtaacggctttcggcacggcaacagtgagttttcgtggtggaacgaaaggtgtctgcaggcacgttagaactcc-a 220  Q
    |||||| ||| ||||||||||||||||| ||||||| | |||||  |  ||||| |||| | |||| |  |||||||||||| || |||||| ||||| |    
T  21416660 ggcagataatgctccggtgtgacggtaatggctttcagtacggcggcgttgagtattcgcgatggatctgaaggtgtctgcatgctcgttagcactccga 21416759  T
Q  221 cgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaag-tgatgtgtaccttgagggtgaagcaagttcacccttatatagcgcg 319  Q
    |||| |||||||||||| || |||||||| |||| ||  | |||||||||||  |||   ||||||| |||||||||||||||||||||| ||||| | |    
T  21416760 cgctcaagtcagtaatgaaactgagaaagagtgtgtagaaagtgttgtgaaaaatgaatcgtaccttaagggtgaagcaagttcacccttgtatag-ggg 21416858  T
Q  320 cgagttggccataaccgtcaccgagttatgcggcgcgtgatta 362  Q
    || ||||| |||||||||| ||| ||||||||||  |||||||    
T  21416859 cgcgttgggcataaccgtctccgggttatgcggcctgtgatta 21416901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 95 - 393
Target Start/End: Complemental strand, 11776431 - 11776140
Alignment:
Q  95 cagtgagaacggttgagttgcaatagcggcagagaattctccggtgtgacggtaacggctttcggcacggcaacagtgagttttcgtggtggaacgaaag 194  Q
    |||||||||||||||| | ||||  |||||||||||| ||| |||||||| |||||   |||||||||| |     ||||| || | ||||| |||||||    
T  11776431 cagtgagaacggttgaatggcaacggcggcagagaatgctctggtgtgacagtaactattttcggcacgacggagatgagtatttgcggtgggacgaaag 11776332  T
Q  195 gtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgtgtaccttgagggt 292  Q
     ||| |||||||||||||| ||||| ||||| ||        ||||| |||||||| |||| ||||  |||||| |||| ||||| ||||||||||||||    
T  11776331 atgtttgcaggcacgttagcactccgacgctcaa--------tggaactgagaaagagtgtttaaggagtgttgggaaaagtgatatgtaccttgagggt 11776240  T
Q  293 gaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatc 392  Q
    ||| |||||||||| |||||||| | ||| ||||| |||||||||| |||  | |||||||| ||||||| ||  | || | ||||||||||||||||||    
T  11776239 gaaacaagttcacctttatatag-gtgcgcgttgggcataaccgtctccggataatgcggcgtgtgattaaggatggagcatgacacatgtagggtgatc 11776141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 182 - 314
Target Start/End: Complemental strand, 4565502 - 4565368
Alignment:
Q  182 ggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgt 279  Q
    |||||||||||||||||||||||||| ||||| ||||| ||  | |||| ||||||| || ||| | ||   |||||||| ||||||||||| ||| |||    
T  4565502 ggtggaacgaaaggtgtctgcaggcatgttagcactccgacaatcaagttagtaatgaaactgaaagagaaagtataagaagtgttgtgaaaagtgttgt 4565403  T
Q  280 gtaccttgagggtgaagcaagttcacccttatata 314  Q
    |||||||||||||||||||||||||||||||||||    
T  4565402 gtaccttgagggtgaagcaagttcacccttatata 4565368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 189 - 385
Target Start/End: Complemental strand, 3459586 - 3459390
Alignment:
Q  189 cgaaaggtgtctgcaggcacgttagaactcca-cgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttg-tgaaa-gtgatgtgtacct 285  Q
    ||||||||| ||||||||||||||| |||||  |||| ||||||||||||||| |||| ||| |||| ||  | |||||| ||||| || |   ||||||    
T  3459586 cgaaaggtgcctgcaggcacgttagcactccggcgctcaagtcagtaatggaactgagcaagagtgtgtagaaagtgttggtgaaaagtaaatcgtacct 3459487  T
Q  286 tgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtag 385  Q
    ||||| |||||||||||||||||||||||| ||||| ||||| | |||||||| | | ||||||||||| ||||||| || ||||| |||||||||||||    
T  3459486 tgagg-tgaagcaagttcacccttatatag-gcgcg-gttggtcgtaaccgtctctgggttatgcggcgtgtgattaaggacgaaggaggacacatgtag 3459390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 133 - 315
Target Start/End: Original strand, 24507391 - 24507574
Alignment:
Q  133 ctccggtgtgacggtaacggctttcggcacggcaacagtgagttttcgtggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtca 231  Q
    |||| |||||||||| |||| |||||| |||||   | ||||| || | |||||| ||||||||||||||| ||||||||| ||||| ||| | ||||||    
T  24507391 ctccagtgtgacggtgacgg-tttcggtacggcggtaatgagtctttgcggtggagcgaaaggtgtctgcatgcacgttagtactccaacgatcaagtca 24507489  T
Q  232 gtaatggaattgagaaagcgtgtataagacgtgttgtg-aaagtgatgtgtaccttgagggtgaagcaagttcacccttatatag 315  Q
     |||||||| |||||||| |||| ||  | |||||||| |||||||    |||||||||||||||| | |||||||| |||||||    
T  24507490 ataatggaaatgagaaagagtgtctagaaagtgttgtgaaaagtgaatcataccttgagggtgaagtaggttcacccatatatag 24507574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 251 - 314
Target Start/End: Original strand, 23243836 - 23243900
Alignment:
Q  251 gtgtataagacgtgttgtgaaa-gtgatgtgtaccttgagggtgaagcaagttcacccttatata 314  Q
    |||| ||||| ||||||||||| |||||||||| |||||||||||||||||||||| ||||||||    
T  23243836 gtgtgtaagaagtgttgtgaaaagtgatgtgtatcttgagggtgaagcaagttcactcttatata 23243900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 188 - 315
Target Start/End: Original strand, 30477629 - 30477758
Alignment:
Q  188 acgaaaggtgtctgcaggcacgttagaactcca-cgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgtgtacct 285  Q
    ||||||| |||||||| ||||||||| |||||| |||| |||||||||| | || |||||||| |||| ||  | ||||||||||| ||||    |||||    
T  30477629 acgaaagatgtctgcatgcacgttagcactccaacgctcaagtcagtaacgaaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaatcatacct 30477728  T
Q  286 tgagggtgaagcaagttcacccttatatag 315  Q
    ||||||||||| ||  ||||||||||||||    
T  30477729 tgagggtgaagtaatgtcacccttatatag 30477758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 97 - 219
Target Start/End: Original strand, 20055476 - 20055598
Alignment:
Q  97 gtgagaacggttgagttgcaatagcggcagagaattctccggtgtgacggtaacggctttcggcacggcaacagtgagttttcgtggtggaacgaaaggt 196  Q
    |||||||| ||||||| ||||  | |||||||||| ||||| ||   | |||||||||| ||| |||||  |  ||| | |||| ||||||||||| |||    
T  20055476 gtgagaacagttgagtcgcaacggtggcagagaatgctccgatgaatcagtaacggcttccggtacggcggcgatgaatcttcgcggtggaacgaagggt 20055575  T
Q  197 gtctgcaggcacgttagaactcc 219  Q
    ||||||||||||||||| |||||    
T  20055576 gtctgcaggcacgttagtactcc 20055598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 315
Target Start/End: Original strand, 20055627 - 20055680
Alignment:
Q  262 gtgttgtgaaa-gtgatgtgtaccttgagggtgaagcaagttcacccttatatag 315  Q
    ||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||    
T  20055627 gtgttgtgaaaagtgatgtgtacctt-agggtgaagcaagttcatccttatatag 20055680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 365
Target Start/End: Original strand, 23269228 - 23269400
Alignment:
Q  182 ggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaagtgatgtg 280  Q
    ||||||||||||||||||| |||||| ||||| ||||| || || ||||||||||||||| ||| |||| |||| ||           ||||||||   |    
T  23269228 ggtggaacgaaaggtgtctacaggcaagttagcactccaacacttaagtcagtaatggaactgataaagagtgtgta-----------gaaagtgaatcg 23269316  T
Q  281 taccttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggg 365  Q
    |||||||||||||||||||  |||||| ||||||| ||||| ||||   ||||||||| ||||||| ||| ||| |||| |||||    
T  23269317 taccttgagggtgaagcaatgtcacccatatatag-gcgcgtgttgaggataaccgtctccgagttttgcagcgtgtgaataggg 23269400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 14666948 - 14666883
Alignment:
Q  182 ggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaatggaattgaga 246  Q
    |||||||| ||||||| ||||||||||||||| ||||| ||| | |||||| ||||||||||||||    
T  14666948 ggtggaacaaaaggtgcctgcaggcacgttagcactccgacgatcaagtcaataatggaattgaga 14666883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 246
Target Start/End: Complemental strand, 17927815 - 17927748
Alignment:
Q  180 gtggtggaacgaaaggtgtctgcaggcacgttagaactcca-cgctaaagtcagtaatggaattgaga 246  Q
    ||||||| ||||||||||  |||| ||||||||| |||||| |||| ||||||||||||||| |||||    
T  17927815 gtggtgggacgaaaggtgcatgcatgcacgttagcactccaacgcttaagtcagtaatggaactgaga 17927748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 171 - 248
Target Start/End: Original strand, 15058006 - 15058084
Alignment:
Q  171 tgagttttcgtggtggaacgaaaggtgtctgcaggcacgttagaact-ccacgctaaagtcagtaatggaattgagaaa 248  Q
    ||||| || ||||||||||||||||||  |||||||||||||| ||| | ||||  |||| ||||||| ||||||||||    
T  15058006 tgagtctttgtggtggaacgaaaggtgcatgcaggcacgttagcactacaacgcacaagttagtaatgaaattgagaaa 15058084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 315
Target Start/End: Original strand, 13754746 - 13754875
Alignment:
Q  188 acgaaaggtgtctgcaggcacgttagaactcca-cgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg-aaagtgatgtgtacct 285  Q
    |||||||||| |||| |||||||||  ||| || |||| |||||||||||| || |||||||| |||| ||  | |||||||| |||||||    |||||    
T  13754746 acgaaaggtgcctgctggcacgttaacactacatcgctcaagtcagtaatgaaactgagaaagagtgtgtagaaagtgttgtgtaaagtgaatcctacct 13754845  T
Q  286 tgagggtgaagcaagttcacccttatatag 315  Q
    |||||||||||| |  |||| |||||||||    
T  13754846 tgagggtgaagctaagtcactcttatatag 13754875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 254
Target Start/End: Complemental strand, 1909816 - 1909744
Alignment:
Q  183 gtggaacgaaaggtgtctgcaggcacgttagaactcca-cgctaaagtcagtaatggaattgagaaagcgtgt 254  Q
    |||||||||||||||  ||||| |||||||| | | || ||||||||||||||||| || |||||||| ||||    
T  1909816 gtggaacgaaaggtgcatgcagacacgttagcatttcaacgctaaagtcagtaatgaaactgagaaagagtgt 1909744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 284 - 352
Target Start/End: Original strand, 16214713 - 16214780
Alignment:
Q  284 cttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcgg 352  Q
    ||||| |||||||||||||||||||||||||| |||||  |  | |||||||||| ||| |||||||||    
T  16214713 cttgaaggtgaagcaagttcacccttatatag-gcgcgcttgtggcataaccgtctccgggttatgcgg 16214780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 365
Target Start/End: Complemental strand, 17698349 - 17698210
Alignment:
Q  226 aagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgtgtaccttgagggtgaagcaagttcacccttatatagcgcgcgagt 324  Q
    |||||||||||||||  ||||||| |||| ||  | ||||||||||| ||||  | ||| ||||||||||||||||  ||||| ||||||| ||||| ||    
T  17698349 aagtcagtaatggaaccgagaaagagtgtgtagaaagtgttgtgaaaagtgaattatactttgagggtgaagcaaggccacccatatatag-gcgcgcgt 17698251  T
Q  325 tggccataaccgtcaccgagttatgcggcgcgtgattaggg 365  Q
     |  ||||||||||  ||| ||  |||||| ||||||||||    
T  17698250 cgagcataaccgtcttcgaatttagcggcgtgtgattaggg 17698210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 97 - 407
Target Start/End: Original strand, 4937 - 5246
Alignment:
Q  97 gtgagaacggttgagttgcaatagcggcagagaattctccggtgtgacggtaacggctttcggcacggcaacagtgagttttcgtggtggaacgaaaggt 196  Q
    |||||||||||||||| ||||  ||||||||||||  ||||||||||| |||| ||||| ||||||||   |   |||| |||| |||||||||||||||    
T  4937 gtgagaacggttgagtagcaacggcggcagagaatgttccggtgtgacagtaaaggcttccggcacggtggcgaagagtcttcgaggtggaacgaaaggt 5036  T
Q  197 gtctgcagg---cacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgtgtaccttgaggg 291  Q
    | || ||     |||||||||||||| || || | |||| |||      ||||||||  ||| ||||| ||||||||||| |||| ||| ||||||||||    
T  5037 gcctacaacaaccacgttagaactccgacactcacgtcattaac-----tgagaaaggttgtgtaagaagtgttgtgaaaagtgacgtgaaccttgaggg 5131  T
Q  292 tgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgat 391  Q
    |||||||||||||||||||||||| | | | | ||  ||||||||||  ||  |||||||||| |||||| ||| || ||||||||||||||| ||||||    
T  5132 tgaagcaagttcacccttatatag-gtgtgcgctgatcataaccgtcttcggcttatgcggcgtgtgatttgggacggagtaggacacatgtaaggtgat 5230  T
Q  392 ccttgcgcgaaggcgc 407  Q
     || |||||| |||||    
T  5231 tctcgcgcgagggcgc 5246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 208 - 365
Target Start/End: Complemental strand, 326 - 167
Alignment:
Q  208 cgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatg-tgtaccttgagggtgaagcaagttca 304  Q
    |||||| ||||| ||||| ||||||||||||||| |||||||| |||| ||||| ||||||||||| ||||   ||||||||||||||||||||||||||    
T  326 cgttagcactccgacgctcaagtcagtaatggaactgagaaagagtgtgtaagaagtgttgtgaaaagtgagaatgtaccttgagggtgaagcaagttca 227  T
Q  305 cccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggg 365  Q
    ||||||| ||| ||||| ||||| |||||| ||| ||| ||||||| | | ||||||||||    
T  226 cccttatctag-gcgcgcgttggtcataactgtctccgggttatgcagtgtgtgattaggg 167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 180 - 362
Target Start/End: Original strand, 40776 - 40959
Alignment:
Q  180 gtggtggaacgaaaggtgtctgcaggcacgttagaactcca-cgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgat 277  Q
    ||||| |||||||||| |  |||||||||||||| |||||| |||| |||||||| |||||| ||| | || | || || || ||||| ||||| |||||    
T  40776 gtggtagaacgaaaggcgcatgcaggcacgttagcactccaacgctcaagtcagtgatggaactgaaagagagagtgtaggaagtgttatgaaaagtgat 40875  T
Q  278 gtgtaccttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgatta 362  Q
    |||||||||||||||||||||||||||||||| ||||| ||| | | ||| |||||||||| ||| ||||||||||  |||||||    
T  40876 gtgtaccttgagggtgaagcaagttcacccttttatag-gcgtgcgctggtcataaccgtctccgggttatgcggcatgtgatta 40959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 137 - 364
Target Start/End: Original strand, 6235 - 6463
Alignment:
Q  137 ggtgtgacggtaacggctttcggcacggcaacagtgagttttcgtggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagtaa 235  Q
    ||||||||||||||| ||||||| ||||||||  ||||| |  |  ||||||| |||||||| |||||||||||||| ||| | | ||| ||||||||||    
T  6235 ggtgtgacggtaacgactttcggtacggcaacgttgagtctctgcagtggaacaaaaggtgtttgcaggcacgttagcacttcgaagctcaagtcagtaa 6334  T
Q  236 tggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgtgtaccttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataac 334  Q
    ||||| |||||||  |||| ||  | ||||||||||| ||||   |||||||||| |||||||||||||| |||||||||| ||||  ||||  ||||||    
T  6335 tggaactgagaaatagtgtgtagaaagtgttgtgaaaagtgagtcgtaccttgagcgtgaagcaagttcatccttatatag-gcgcacgttgaacataac 6433  T
Q  335 cgtcaccgagttatgcggcgcgtgattagg 364  Q
    |||| ||| |||| | || | |||||||||    
T  6434 cgtctccgggttacgtggtgtgtgattagg 6463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 183 - 315
Target Start/End: Complemental strand, 21726 - 21592
Alignment:
Q  183 gtggaacgaaaggtgtctgcaggcacgttagaactcca-cgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtg-aaagtgatgtg 280  Q
    ||||||||||  ||| |||| |||||||||| |||||| | || ||||||||| || || ||| | || |||| ||||| |||||||| |||||||||||    
T  21726 gtggaacgaagtgtgcctgcgggcacgttagcactccaacactcaagtcagtattgaaactgaaagagagtgtttaagaagtgttgtggaaagtgatgtg 21627  T
Q  281 taccttgagggtgaagcaagttcacccttatatag 315  Q
    ||||||||||||||||||| |||||||||| ||||    
T  21626 taccttgagggtgaagcaaattcacccttacatag 21592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 467
Target Start/End: Complemental strand, 21533 - 21441
Alignment:
Q  375 gacacatgtagggtgatccttgcgcgaaggcgcgctcatatgtgctacggtgtacgcaagatggcgtgctcccttaaatgtggagtcttaagg 467  Q
    ||||| ||||| ||||||| |||| | ||||| |||||| ||||  ||| || | ||||| |||||||||||||||| |||| || |||||||    
T  21533 gacacgtgtagcgtgatccctgcgaggaggcgtgctcatgtgtggcacgatgcatgcaagttggcgtgctcccttaagtgtgtagccttaagg 21441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 206 - 394
Target Start/End: Complemental strand, 15515 - 15326
Alignment:
Q  206 cacgttagaactcc-acgctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtgaaa-gtgatgtgtaccttgagggtgaagcaagttc 303  Q
    |||||||| ||||| |||||  |||||||||||||| |||||||| || | ||  | ||||||||||| ||||    |||||||||||||||||||||||    
T  15515 cacgttagcactccgacgctccagtcagtaatggaactgagaaagagtatctagaaagtgttgtgaaaagtgaatcataccttgagggtgaagcaagttc 15416  T
Q  304 acccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattaggggcgaagtaggacacatgtagggtgatcct 394  Q
    |||||||||||| | ||  ||| | |||||||||  |||  ||||||| |  |||||||||| | ||| |||||||||||| |||||||||    
T  15415 acccttatatag-gtgcacgttagtcataaccgtgtccggattatgcgacatgtgattagggacaaaggaggacacatgtaaggtgatcct 15326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0101 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 108 - 249
Target Start/End: Complemental strand, 10903 - 10759
Alignment:
Q  108 tgagttgcaatagcggcagagaattctccggtgtgacggtaacggctttcggcacggcaacagtga---gttttcgtggtggaacgaaaggtgtctgcag 204  Q
    ||||| |||| ||||||| | ||| |||||| |||| | ||| ||||| ||||||||| |||||||   || |||||||||||| |||||||||||| ||    
T  10903 tgagtggcaacagcggcaaataatgctccggcgtgatgataa-ggcttccggcacggcgacagtgatgagtcttcgtggtggaatgaaaggtgtctgtag 10805  T
Q  205 gcacgttagaactcc-acgctaaagtcagtaatggaattgagaaag 249  Q
    ||| ||||| ||||| ||| | ||||||||||||||| ||||||||    
T  10804 gcatgttagcactccgacgttcaagtcagtaatggaactgagaaag 10759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 262 - 315
Target Start/End: Original strand, 42311 - 42365
Alignment:
Q  262 gtgttgtgaaa-gtgatgtgtaccttgagggtgaagcaagttcacccttatatag 315  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  42311 gtgttgtgaaaagtgttgtgtaccttgagggtgaagcaagttcacccttatatag 42365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 315
Target Start/End: Original strand, 13904 - 14039
Alignment:
Q  182 ggtggaacgaaaggtgtctgcaggcacgttagaactccac-gctaaagtcagtaatggaattgagaaagcgtgtataagacgtgttgtga-aagtgatgt 279  Q
    ||||| ||||||||||  || | ||||||||| ||||||  ||| |||||||||||| || |||||||| |||| ||  | ||||||||| ||||||       
T  13904 ggtgggacgaaaggtgcatgaatgcacgttagtactccaaagctcaagtcagtaatgaaactgagaaagagtgtgtagaaagtgttgtgagaagtgaatc 14003  T
Q  280 gtaccttgagggtgaagcaagttcacccttatatag 315  Q
     |||||||||||||||||||| ||||||||||||||    
T  14004 ataccttgagggtgaagcaagatcacccttatatag 14039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 97 - 166
Target Start/End: Original strand, 4280 - 4349
Alignment:
Q  97 gtgagaacggttgagttgcaatagcggcagagaattctccggtgtgacggtaacggctttcggcacggca 166  Q
    |||||||||||||||| |||||  | | ||||||| |||||||||||||||||| |||| ||||||||||    
T  4280 gtgagaacggttgagtggcaatgacagaagagaatgctccggtgtgacggtaacagcttccggcacggca 4349  T

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Target: scaffold0263 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 270 - 363
Target Start/End: Complemental strand, 20516 - 20424
Alignment:
Q  270 aaagtgatgtgtaccttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatgcggcgcgtgattag 363  Q
    |||||||||||||||||| |||||||  || ||||||| ||||||| ||||| ||||| |||| ||||| ||||||||||  ||| ||||||||    
T  20516 aaagtgatgtgtaccttgtgggtgaaataaattcacccatatatag-gcgcgcgttggtcatagccgtctccgagttatgtagcgtgtgattag 20424  T

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Target: scaffold0074 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 254
Target Start/End: Original strand, 35186 - 35308
Alignment:
Q  133 ctccggtgtgacggtaacggctttcggcacggcaacagtgagttttcgtggtggaacgaaaggtgtctgcaggcacgttagaactc-cacgctaaagtca 231  Q
    ||||||||||| ||||||||||| ||| |||||  |  ||||| ||||| ||| ||||||| |||  |||||||||||||| ||||  || || ||||||    
T  35186 ctccggtgtgatggtaacggcttccggtacggcggcgttgagtcttcgtagtgcaacgaaatgtgcttgcaggcacgttagcactctgacactcaagtca 35285  T
Q  232 gtaatggaattgagaaagcgtgt 254  Q
    |||| |||| |||||||| ||||    
T  35286 gtaacggaactgagaaagagtgt 35308  T

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Target: scaffold0074; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 53292 - 53247
Alignment:
Q  270 aaagtgatgtgtaccttgagggtgaagcaagttcacccttatatag 315  Q
    |||||| ||||||||  |||| ||||||||||||||||||||||||    
T  53292 aaagtgttgtgtacccagaggttgaagcaagttcacccttatatag 53247  T

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Target: scaffold0057 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 349
Target Start/End: Complemental strand, 73810 - 73743
Alignment:
Q  281 taccttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtcaccgagttatg 349  Q
    |||||| |||||||||||||||||||  ||||||| ||||| |||||  ||||||||| ||||||||||    
T  73810 taccttcagggtgaagcaagttcaccaatatatag-gcgcgtgttgggtataaccgtctccgagttatg 73743  T

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Target: scaffold0518 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0518
Description:

Target: scaffold0518; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 338
Target Start/End: Original strand, 9031 - 9113
Alignment:
Q  256 taagacgtgttgtgaaag-tgatgtgtaccttgagggtgaagcaagttcacccttatatagcgcgcgagttggccataaccgtc 338  Q
    ||||| |||||||||||  | |||||||||||||||||| || | |||||||||||||||| || || ||||| ||||||||||    
T  9031 taagaagtgttgtgaaaaattatgtgtaccttgagggtggagaaggttcacccttatatag-gcccgcgttggtcataaccgtc 9113  T

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Target: scaffold0022 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 233
Target Start/End: Complemental strand, 69333 - 69281
Alignment:
Q  182 ggtggaacgaaaggtgtctgcaggcacgttagaactcc-acgctaaagtcagt 233  Q
    |||||||| ||||||| ||||||||||||||| ||||| ||||| ||||||||    
T  69333 ggtggaacaaaaggtgcctgcaggcacgttagcactccaacgctcaagtcagt 69281  T

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