View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17106_low_5 (Length: 482)
Name: NF17106_low_5
Description: NF17106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17106_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 370; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 17 - 459
Target Start/End: Original strand, 19592468 - 19592907
Alignment:
| Q |
17 |
atatataacacaagaagttacggctaaggctatacagatgtaatcttttatatttgatgccttcgatgaatatgatggatcagatggtgat------cgt |
110 |
Q |
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| T |
19592468 |
atatataacacaagaagttacggctaaggctatacagatgtaatcttttatatttgatgccttcgatgaatatgatgcatcagatggtgatgttgatcgt |
19592567 |
T |
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| Q |
111 |
gatctagatggtgttatccacattgaagagcgatatcgtggtgggatgaaactttgttccatattagaatgggatgatcgtggtggttccgacgaatatg |
210 |
Q |
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| T |
19592568 |
gatctagatggtgttatccacgttgaagagcgatatcgtggtgggatgaaactttgttccatattagaatgggatgatcgtggtgtttccgacgaatatg |
19592667 |
T |
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| Q |
211 |
gtgtaatagaataatatggtggtcgtgctggctgcgatgaagaagatcgttgaaaagaatagtgtgcttgttgtggtggttgcgacgaaaatgatggtcg |
310 |
Q |
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| T |
19592668 |
gtgtaatagaataatatggtggtcgtgctggctgcgatgaagaagatcgttgaaaagaatag---------tgtggtggttgcgacaaaaatgatggtcg |
19592758 |
T |
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| Q |
311 |
actaaattgatatggtggtcgtggtggctgctgcgacgaatatgatggtgcaataaattgatatggtggttgtggtcgttgcgttgaaaatggtgcattg |
410 |
Q |
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| T |
19592759 |
actaaaatgatatggtggtcgtggtggctgctgcgacgaatatgatggtgcaataaattgatatggtggttgtggtcgctgcgttgaaaatggtgcattg |
19592858 |
T |
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| Q |
411 |
gattgggatggtagctgcggtgtagatagtgttcgatggaataaatatt |
459 |
Q |
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| T |
19592859 |
gattgggatggtagctgcggtgtagatagtgttcgatggaataaatatt |
19592907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 426
Target Start/End: Original strand, 19597423 - 19597480
Alignment:
| Q |
369 |
tgatatggtggttgtggtcgttgcgttgaaaatggtgcattggattgggatggtagct |
426 |
Q |
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| T |
19597423 |
tgatatggtggtcgtggtggctgcggtgaagatggtgtattggattgtgatggtagct |
19597480 |
T |
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