View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17106_low_8 (Length: 359)
Name: NF17106_low_8
Description: NF17106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17106_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 31 - 343
Target Start/End: Original strand, 41066805 - 41067123
Alignment:
| Q |
31 |
gaagtgacaaatggacagcgaaaacgacgccgaattgaatgaaatattgatgcaaagcttttcaaccttgcgacgtgaagaaaacgacggtgccgcttgg |
130 |
Q |
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| T |
41066805 |
gaagtgacaaatggacagcgaaaacgacgccgaattgaatgaaatattgatgcaaagcttttcaaccttgcgacgtgaagaaaacgacggtgccgcttgg |
41066904 |
T |
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| Q |
131 |
tggtgccaccgtacgctaccttccaccatcttcccaaaaggacattgtatccttcacctccttcatcttcctcttcctcttactcacgatcgaacacaat |
230 |
Q |
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| T |
41066905 |
tggtgccaccgtacgctaccttccaccatcttcccaaaacgacattgtatccttcacctccttcatcttcctcatcctcttactcacgatcgaacacaat |
41067004 |
T |
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| Q |
231 |
tcccattctgaacggtgatgtattcttttccttcttttatcatcgttattcaaattcaaattac------tcgtttgatttagaaattcatcattctcat |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
41067005 |
tcccattctgaacggtgatgtattcttttccttcttttatcatcgttattcaaattcaaattacgctttttcgtttgatttagaaattcatcattctcat |
41067104 |
T |
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| Q |
325 |
atatgagaaactttaaatt |
343 |
Q |
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||||||||||||||||||| |
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| T |
41067105 |
atatgagaaactttaaatt |
41067123 |
T |
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