View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17106_low_9 (Length: 349)
Name: NF17106_low_9
Description: NF17106
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17106_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 2833595 - 2833912
Alignment:
| Q |
18 |
aaatatttttgactagcaagtgtttgatttcttcttgtgtctacttgtattttccatcatcatgtggagtattgtaggccttcattttcttccaaaacca |
117 |
Q |
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| T |
2833595 |
aaatatttttgactagcaagtgtttgatttcttcttgtgtctacttgtattttccatcatcatgtggagtattgtaggccttcattttcttccaaaacca |
2833694 |
T |
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| Q |
118 |
aagtcacagtcccaacatcacaagcatatgtaatgtaatatatagcatggtcctataaagaaaacaaacaaatttccattgtccctttgtttgttatcct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2833695 |
aagtcacagtcccaacatcacaagcatatgtaatgtaatatatagcatggtcctataaagaaaacaaacaaatttccattgtccctttgtttgttatcct |
2833794 |
T |
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| Q |
218 |
tattggattccttataaataatagcattctgcaaatataataaatggaacaaaatcaaaattccttacgcaacacatgagatagggaatgaccaaagatg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2833795 |
tattggattccttataaataatagcattctgcaaatataataaatggaacaaaatcaaaattccttacgcaacacatgagatagggaatgaccaaagatg |
2833894 |
T |
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| Q |
318 |
tctgtttcatgttgcttt |
335 |
Q |
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|||||||||||||||||| |
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| T |
2833895 |
tctgtttcatgttgcttt |
2833912 |
T |
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