View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17107_high_12 (Length: 252)
Name: NF17107_high_12
Description: NF17107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17107_high_12 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 12 - 243
Target Start/End: Complemental strand, 31876654 - 31876427
Alignment:
| Q |
12 |
aaaggcactattttcaatcatggcatcattatcatgagaagcaatctattcaatattgctcacatttcttgaaatgaactctacaatacatcctctttta |
111 |
Q |
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| T |
31876654 |
aaaggcactattttcaatcatggcatcattatcatgagaagcaatctattcaatactgctcacatttcttgaaatgaactctacaatacatcctctttta |
31876555 |
T |
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| Q |
112 |
tctctatttgcaaggttgaaggaggaaaaatcacacaaatagaacttaaaaaggtnnnnnnnnnnnnncataataagtaaattgtgagcattaaattatt |
211 |
Q |
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| T |
31876554 |
tatctatttgcaaggttgaaggaggaaaaatcacacaaatagaacttaaaaaggt----aaaaaaaaacataataagtaaattgtgagcattaaattatt |
31876459 |
T |
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| Q |
212 |
aattttctgcttcatctaacaccatctctttg |
243 |
Q |
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| T |
31876458 |
aattttctgcttcatctaacaccatctctttg |
31876427 |
T |
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