View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17107_high_16 (Length: 241)
Name: NF17107_high_16
Description: NF17107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17107_high_16 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 13 - 225
Target Start/End: Original strand, 45039537 - 45039749
Alignment:
| Q |
13 |
gtgagatgaacactgaagaatgttacgggagaaatgaatcacttctagaggttgaagctaggattctagagaaggaagttttaatcaagatttattgtgg |
112 |
Q |
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| T |
45039537 |
gtgaaatgaacactgaagaatgttacgggagaaatgaatcacttctagaggttgaagctaggattctagagaaggaagttttaatcaagatttattgtgg |
45039636 |
T |
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| Q |
113 |
aatgcaagaagggattgtggtcaatataatgtcccagcttcaacttcttcatctctccataacaagtatcaatgtcttgccatttggaaatactcttgac |
212 |
Q |
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| T |
45039637 |
aatgcaagaagggattgtggtcaatataatgtcccagcttcaacttcttcatctgtccataacaagtatcaatgtcttgccatttggaaatactcttgac |
45039736 |
T |
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| Q |
213 |
atcaccattattg |
225 |
Q |
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||||||||||||| |
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| T |
45039737 |
atcaccattattg |
45039749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 13 - 225
Target Start/End: Complemental strand, 45083053 - 45082841
Alignment:
| Q |
13 |
gtgagatgaacactgaagaatgttacgggagaaatgaatcacttctagaggttgaagctaggattctagagaaggaagttttaatcaagatttattgtgg |
112 |
Q |
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| T |
45083053 |
gtgaaatgaacactaaagaatgttatcggcacaatgaaacatttccagagcttgaagtgagggttctagggaaggaagtgttaatcaagattcgctgtgg |
45082954 |
T |
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| Q |
113 |
aatgcaagaagggattgtggtcaatataatgtcccagcttcaacttcttcatctctccataacaagtatcaatgtcttgccatttggaaatactcttgac |
212 |
Q |
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| T |
45082953 |
gaagtaaaaggagattctggtcaatataattttgcagcttcaaattcttcatctctccataacaactaccaatgtcttgccatttggaaatactcttaac |
45082854 |
T |
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| Q |
213 |
atcaccattattg |
225 |
Q |
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| T |
45082853 |
atcactattattg |
45082841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 45065449 - 45065543
Alignment:
| Q |
13 |
gtgagatgaacactgaagaatgttacgggagaaatgaatcacttctagaggttgaagctaggattctagagaaggaagttttaatcaagatttat |
107 |
Q |
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|||| |||||||||||||||||||| || ||||| ||||||||||| ||||||| ||||| |||| | ||||||||| | ||| ||||||||| |
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| T |
45065449 |
gtgaaatgaacactgaagaatgttatggccgaaataaatcacttctaaaggttgatgctagagttcttgggaaggaagtgtcaattaagatttat |
45065543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 18 - 225
Target Start/End: Original strand, 29377295 - 29377502
Alignment:
| Q |
18 |
atgaacactgaagaatgttacgggagaaatgaatcacttctagaggttgaagctaggattctagagaaggaagttttaatcaagatttattgtggaatgc |
117 |
Q |
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||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||| ||| ||||| |||||||||||| ||||||| |||| |
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| T |
29377295 |
atgaaaactgaagaatgttacgggcgaaatgaatcacttgtagaggttgaagctagggttctagggaatgaagtgttaatcaagattcattgtggcatgc |
29377394 |
T |
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| Q |
118 |
aagaagggattgtggtcaatataatgtcccagcttcaacttcttcatctctccataacaagtatcaatgtcttgccatttggaaatactcttgacatcac |
217 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||| | |
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| T |
29377395 |
aagaggggattgtggtcaatataatgtcccagcttcagcttcttcatctctccgtaacaactaccaatgtcttgccatttggaaatactcttgacatcgc |
29377494 |
T |
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| Q |
218 |
cattattg |
225 |
Q |
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|||||||| |
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| T |
29377495 |
cattattg |
29377502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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