View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17107_high_3 (Length: 515)
Name: NF17107_high_3
Description: NF17107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17107_high_3 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 3 - 515
Target Start/End: Original strand, 5722752 - 5723266
Alignment:
| Q |
3 |
aaaattcgtgatgggactataacaagttcacagccacgaacataaattcaattcatgcattttgaaataggctttcattttccatgtattttaatagatg |
102 |
Q |
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| T |
5722752 |
aaaattcgtgatgggactataacaagttcacagccacgaacataaattcaattcatgcattttgaaataggctttcattttccatgtattttaatagatg |
5722851 |
T |
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| Q |
103 |
tttgtttatacgacattgctagttattccgaaagtttttgtcccggcattatcacggcagttgtaattgtaacagtaacaaaatctgtgtcatattcatc |
202 |
Q |
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| T |
5722852 |
tttgtttatacgacattgctagttattccgaaagtttttgtcccggcattatcacggcagttgtaattgtaacagtaacaaaatctgtgtcatattcatc |
5722951 |
T |
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| Q |
203 |
aaccgacgtaattgtnnnnnnnn-tccaaaatccaatgcctatcctttatttgtgatgtgttcgtaatggattttctcgggagaaatagcactactctta |
301 |
Q |
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| T |
5722952 |
aaccgacgtaattgtaaaaaaaaatccaaaattcaatgcctatcctttatttgcgatgtgttcgtaatggattttctcgggagaaatagcactactctta |
5723051 |
T |
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| Q |
302 |
tttactatattttaattattttttcaacggtgtagcacaatttttattgcaagtgtactaaagccacaataaatagatttctcggaatataatttactaa |
401 |
Q |
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| T |
5723052 |
tttactatatttcaattattttttcaacggtgtagcacaatatttattgcaagtgtactaaagccacaataaatagatttctcggaatataatttactaa |
5723151 |
T |
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| Q |
402 |
ttttaaagtgagtctcataccttcctttgcaccctctacattgagaaaccctctcccttgagactcaattaatcaaggaaatcgcagtcg-aaaaaatat |
500 |
Q |
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| T |
5723152 |
ttttaaagcgagtctcataccttcctttgcaccctctacattgagaaaccctctcccttgagactcaattaatcaaggaaatcgcagtcgaaaaaaatat |
5723251 |
T |
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| Q |
501 |
caccgacaaaagacc |
515 |
Q |
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| T |
5723252 |
caccgacaaaagacc |
5723266 |
T |
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Back To:
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Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 112 - 204
Target Start/End: Original strand, 33493327 - 33493419
Alignment:
| Q |
112 |
acgacattgctagttattccgaaagtttttgtcccggcattatcacggcagttgtaattgtaacagtaacaaaatctgtgtcatattcatcaa |
204 |
Q |
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||||||||||||||||| |||||| |||||||||| ||||| || |||||||||||||||||||||||| || | | |||| |||||||| |
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| T |
33493327 |
acgacattgctagttatctcgaaagcttttgtcccgattttatctcgacagttgtaattgtaacagtaacaagatttttatcattttcatcaa |
33493419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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