View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17107_high_5 (Length: 400)
Name: NF17107_high_5
Description: NF17107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17107_high_5 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 330; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 18 - 383
Target Start/End: Original strand, 18188917 - 18189282
Alignment:
| Q |
18 |
actgatatgtattagtgtcctgtcgattccatgtcctgtcggtgtctgtgccataggtaaattatagtgagatagactggtcagatttcaaaatgtttct |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18188917 |
actgatatgtattagtgtcctgtcgattccatgtcctgtctgtgtctgtgccataggtaaattatagtgagatagactggtcagatttcaaaatgtttct |
18189016 |
T |
|
| Q |
118 |
gaaatagatcatacgctagtatagttgctttctgctaactaagattcttttcttttcttctttattctgaatcagatgactttgttgagtaaatatcttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18189017 |
gaaatagatcatacgctagtatagttgctttctgctaactaagattcttttcttttcttctttattctgaatcagatgactttgttgagtaaatatcttt |
18189116 |
T |
|
| Q |
218 |
gttgtacatattatgtaaatgagacaggataaataacaagatgaatagacaaaggaaaggagatttttggactgaaatccaatggnnnnnnnnagaataa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
18189117 |
gttgtacatattatgtaaatgagacaggataaataacaagatgaatagacaaaggaaaggagatttttggactgaaatccaatgtttttttttagaataa |
18189216 |
T |
|
| Q |
318 |
atatcaggatagtgccattgctattgcttcttcagttcttaactactctgcagtagtagtaatatt |
383 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18189217 |
atatcaggatagtgtcattgctattgcttcttcagttcttaactactctgcagtagtagtaatatt |
18189282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 34 - 375
Target Start/End: Original strand, 18194174 - 18194500
Alignment:
| Q |
34 |
gtcctgtcgattccatgtcctgtcggtgtctgtgccataggtaaattatagtgagatagactggtcagatttcaaaatgtttctgaaatagatcatacgc |
133 |
Q |
| |
|
||||||||||||| | |||||||| ||||||||| || ||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||| || |
|
|
| T |
18194174 |
gtcctgtcgattcaacgtcctgtccgtgtctgtgtcaacggtaaattatagtgagaaagactgatcagatttcaaagtgtttctgaaatagatcataggc |
18194273 |
T |
|
| Q |
134 |
tagtatagttgctttctgctaactaagattcttttcttttcttctttattctgaatcagatgactttgttgagtaaatatctttgttgtacatattatgt |
233 |
Q |
| |
|
|| |||||||| |||||||||| |||||||| |||| | || ||| |||||||||||||| ||||||||||||||||||||||||| ||| |
|
|
| T |
18194274 |
taatatagttgatttctgctaa-------gcttttcttctctt-tcta----gaaccagatgactttgtttagtaaatatctttgttgtacatattctgt |
18194361 |
T |
|
| Q |
234 |
aaatgagacaggataaataacaagatgaatagacaaaggaaaggagatttttggactgaaatccaatggnnnnnnnnagaataaatatcaggatagtgcc |
333 |
Q |
| |
|
|||||||||| | ||| ||| ||| |||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||| | ||| |
|
|
| T |
18194362 |
aaatgagacacg---aatcacacgataaata-acaaaggaaaggagattttttgactgaaatccaatgatttgttttagaataaatatcaggagaatgct |
18194457 |
T |
|
| Q |
334 |
attgctattgcttcttcagttct-taactactctgcagtagta |
375 |
Q |
| |
|
|||||||||||||| |||||||| || |||||||| ||||||| |
|
|
| T |
18194458 |
attgctattgcttcatcagttctatatctactctgtagtagta |
18194500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 186 - 275
Target Start/End: Original strand, 18198920 - 18199007
Alignment:
| Q |
186 |
gaatcagatgactttgttgagtaaatatctttgttgtacatattatgtaaatgagacaggataaataacaagatgaatagacaaaggaaa |
275 |
Q |
| |
|
|||| |||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
18198920 |
gaattagataactttgttgagtaaatatctttgatgcacatattatgtaaatgagacaggataaataacaag--gaaaagacaaaggaaa |
18199007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 197 - 302
Target Start/End: Original strand, 18231703 - 18231811
Alignment:
| Q |
197 |
ctttgttgagtaaatatctttgttgtacatattatgtaaatgagacaggataaataacaagatgaat---agacaaaggaaaggagatttttggactgaa |
293 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||| | || |||||| ||||||||||||||| ||||| |||| ||||||| |||||||||| ||| | |
|
|
| T |
18231703 |
ctttgttgagtaaatatctttgatgtgcatattttttatatgagataggataaataacaaggtgaattgaagaccaaggaaatgagatttttgaactaat |
18231802 |
T |
|
| Q |
294 |
atccaatgg |
302 |
Q |
| |
|
||||||||| |
|
|
| T |
18231803 |
atccaatgg |
18231811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University