View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17107_high_6 (Length: 387)
Name: NF17107_high_6
Description: NF17107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17107_high_6 |
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| [»] chr3 (7 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 95 - 387
Target Start/End: Original strand, 9420153 - 9420445
Alignment:
| Q |
95 |
gataaacatatagtctgcaaaagtaacaataaaataagatgatcacgctcatcaacattgttacatcgtatcatacaaattacctcctcaaaacaaaatg |
194 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
9420153 |
gataaacatatagtctgcaaaagtaaaaataaaataagatgatcacgctcatcaacattgttacatcttatcatacaaattacctcctcaaaataaaatg |
9420252 |
T |
|
| Q |
195 |
cattaaatatatttagatttctgaaaatttaaaagtgcagatacttatttacaaagaacataattggtaataaagtaatatttgatgcaacaacatttca |
294 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9420253 |
cattaaatatatttagatttctgaaaagttaaaagtgcagatacttatttacaaagaacataattggtaataaagtaatatttgatgcaacaacatttca |
9420352 |
T |
|
| Q |
295 |
atatttctatttgtgataacataaactaagaacacaacagaacaaaatcaaaatcacattagaaatttctcaatgcaagataacatactgagt |
387 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9420353 |
atatttctatttgtaataacataaactaagaacacaacagaacaaaatcaaaatcacattagaaatttctcaatgcaagataacatactgagt |
9420445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 73 - 387
Target Start/End: Original strand, 9401888 - 9402206
Alignment:
| Q |
73 |
aatatgtaattagggatcaaccgataaacatatagtctgcaaaagtaacaataaaataagatgatcacgctcatcaacattg----ttacatcgtatcat |
168 |
Q |
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||||||||||||||||| | | | |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||| |||||| |
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| T |
9401888 |
aatatgtaattagggattagctgctaaacatatagtctgcaaaagtaacaataaaagaagatgatcaagctcatcaacattgattgttacatcttatcat |
9401987 |
T |
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| Q |
169 |
acaaattacctcctcaaaacaaaatgcattaaatatatttagatttctgaaaatttaaaagtgcagatacttatttacaaagaacataattggtaataaa |
268 |
Q |
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|||||| ||| ||||||||||||||| || ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
9401988 |
acaaatcaccccctcaaaacaaaatgtatgaaacatatttagatttctgaaaagttaaaagtgcagatacttatttacaaagaacatgattggtacaaaa |
9402087 |
T |
|
| Q |
269 |
gtaatatttgatgcaacaacatttcaatatttctatttgtgataacataaactaagaacacaacagaacaaaatcaaaatcacattagaaatttctcaat |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9402088 |
gtaatatttgatgcaacaacatttcaatatttctatttgtaataacataaactaagaacacaacagaacaaaatcaaaatcacattagaaatttctcaat |
9402187 |
T |
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| Q |
369 |
gcaagataacatactgagt |
387 |
Q |
| |
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||||||||||||||||||| |
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| T |
9402188 |
gcaagataacatactgagt |
9402206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 49 - 383
Target Start/End: Original strand, 9432356 - 9432695
Alignment:
| Q |
49 |
accagaacgcttatcttctcat-tcaatatgtaattagggatcaaccgataaacatatagtctgcaaaagtaacaataaaataagatgatcacgctcatc |
147 |
Q |
| |
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||||||| |||||||||||||| ||||||||||||||||||| | | | |||||||||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
9432356 |
accagaaagcttatcttctcatatcaatatgtaattagggattagctgctaaacatatagtctgcaaaagtaacaataaaagaagatgatcaagctcatc |
9432455 |
T |
|
| Q |
148 |
aacattg----ttacatcgtatcatacaaattacctcctcaaaacaaaatgcattaaatatatttagatttctgaaaatttaaaagtgcagatacttatt |
243 |
Q |
| |
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||||||| ||||||| |||||||||||| ||| |||||||||||||||||| ||| |||||||||||||| |||||||| ||||||||||||||||| |
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| T |
9432456 |
aacattgattgttacatcttatcatacaaatcaccccctcaaaacaaaatgcatgaaacatatttagatttctaaaaatttagaagtgcagatacttatt |
9432555 |
T |
|
| Q |
244 |
tacaaagaacataattggtaataaagtaatatttgatgcaacaacatttcaatatttctatttgtgataacataaactaagaacacaacagaacaaaatc |
343 |
Q |
| |
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||||||||||||| ||| || ||| | |||||||||||||||||||||||||||| ||| | ||||||||||||||| |||||||| | ||| || |
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| T |
9432556 |
tacaaagaacatatttgctacaaaatccagatttgatgcaacaacatttcaatatttcgctttctaataacataaactaagtacacaacaaagcaatatg |
9432655 |
T |
|
| Q |
344 |
aaaatcacattagaaatttctcaatgcaagataacatact |
383 |
Q |
| |
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| |||| ||||||| | |||| |||||||||||||||||| |
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| T |
9432656 |
acaatcgcattagatagttcttaatgcaagataacatact |
9432695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 114 - 384
Target Start/End: Original strand, 9356943 - 9357198
Alignment:
| Q |
114 |
aaagtaacaataaaataagatgatcacgctcatcaacattg----ttacatcgtatcatacaaattacctcctcaaaacaaaatgcattaaatatattta |
209 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||||||| || |||| ||||||||| |||| | |||||||| ||||||||| ||| ||||||| |
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| T |
9356943 |
aaagtaacaataaaagaagatgatcaagctcatcaacattgattgttgcatcttatcatacagattatcccctcaaaataaaatgcatgaaacatattta |
9357042 |
T |
|
| Q |
210 |
gatttctgaaaatttaaaagtgcagatacttatttacaaagaacataattggtaataaagtaatatttgatgcaacaacatttcaatatttctatttgtg |
309 |
Q |
| |
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|| |||| ||||||||||||| ||| ||||| || || |||| ||||| |||||||||||||| |||||||||| ||| | |
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| T |
9357043 |
ga----------------agtggagatacttatttagaaa--acatatatgctacaaaagccatattcgatgcaacaacatt-caatatttctctttcta |
9357123 |
T |
|
| Q |
310 |
ataacataaactaagaacacaacagaacaaaatcaaaatcacattagaaatttctcaatgcaagataacatactg |
384 |
Q |
| |
|
||||||||||| ||| |||||| | | ||| |||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
9357124 |
ataacataaaccaagcacacaagaaagcaatatcacaatcacattagaaatttctcaatgcaagataacatactg |
9357198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 221 - 379
Target Start/End: Original strand, 9347196 - 9347351
Alignment:
| Q |
221 |
atttaaaagtgcagatacttatttacaaagaacataattggtaataaagtaatatttgatgcaacaacatttcaatatttctatttgtgataacataaac |
320 |
Q |
| |
|
||||| ||||||||||||||||||| ||| ||||| || || |||| ||||| |||||||||||||| |||||||||| ||| | ||||||||||| |
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|
| T |
9347196 |
atttagaagtgcagatacttatttagaaa--acatatgtgctacaaaagccatattcgatgcaacaacatt-caatatttctctttctaataacataaac |
9347292 |
T |
|
| Q |
321 |
taagaacacaacagaacaaaatcaaaatcacattagaaatttctcaatgcaagataaca |
379 |
Q |
| |
|
||| |||||| | | ||| |||| |||||||||||||||||||||||||||||||||| |
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|
| T |
9347293 |
caagcacacaagaaagcaatatcacaatcacattagaaatttctcaatgcaagataaca |
9347351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 9340077 - 9340141
Alignment:
| Q |
97 |
taaacatatagtctgcaaaagtaacaataaaataagatgatcacgctcatcaacattgttacatc |
161 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||| |||| | || ||||||||||||||| |
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|
| T |
9340077 |
taaacatatagtctgcaaaagtaacaatgaaagaagataatcaaacccaacaacattgttacatc |
9340141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 9401833 - 9401874
Alignment:
| Q |
49 |
accagaacgcttatcttctcat-tcaatatgtaattagggat |
89 |
Q |
| |
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||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
9401833 |
accagaaagcttatcttctcatatcaatatgtaattagggat |
9401874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 106 - 161
Target Start/End: Complemental strand, 9159907 - 9159852
Alignment:
| Q |
106 |
agtctgcaaaagtaacaataaaataagatgatcacgctcatcaacattgttacatc |
161 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||| |
|
|
| T |
9159907 |
agtctgcaaaagtaacaataaaagaagataatcaagctcatcaacattgttacatc |
9159852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 99 - 161
Target Start/End: Original strand, 9170514 - 9170576
Alignment:
| Q |
99 |
aacatatagtctgcaaaagtaacaataaaataagatgatcacgctcatcaacattgttacatc |
161 |
Q |
| |
|
||||| ||||||| |||||||||||||||| ||||| |||| ||||||||||||||||||||| |
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|
| T |
9170514 |
aacatgtagtctgaaaaagtaacaataaaagaagataatcaagctcatcaacattgttacatc |
9170576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 105 - 160
Target Start/End: Original strand, 7040933 - 7040988
Alignment:
| Q |
105 |
tagtctgcaaaagtaacaataaaataagatgatcacgctcatcaacattgttacat |
160 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||| | |||||||||||| |||| |
|
|
| T |
7040933 |
tagtctgcaaaagtaacaataaaagaagataatcaatcccatcaacattgtcacat |
7040988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 155
Target Start/End: Original strand, 7046426 - 7046482
Alignment:
| Q |
99 |
aacatatagtctgcaaaagtaacaataaaataagatgatcacgctcatcaacattgt |
155 |
Q |
| |
|
||||| || ||||||||||||||||||||| ||||| |||| || || ||||||||| |
|
|
| T |
7046426 |
aacatgtaatctgcaaaagtaacaataaaagaagataatcaagcccagcaacattgt |
7046482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 131
Target Start/End: Original strand, 231132 - 231165
Alignment:
| Q |
98 |
aaacatatagtctgcaaaagtaacaataaaataa |
131 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
231132 |
aaacatatagtctgcaaaaggaacaataaaataa |
231165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 127
Target Start/End: Original strand, 16629600 - 16629628
Alignment:
| Q |
99 |
aacatatagtctgcaaaagtaacaataaa |
127 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
16629600 |
aacatatagtctgcaaaagtaacaataaa |
16629628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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