View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17107_low_1 (Length: 813)
Name: NF17107_low_1
Description: NF17107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17107_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 521; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 19 - 688
Target Start/End: Complemental strand, 29671921 - 29671243
Alignment:
| Q |
19 |
cagttattttcttcttatatatagttatatcatatatcttgttaatataaatcaatcttgatgtgggtttcatccattttttagcacaaaataaaaatgt |
118 |
Q |
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||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
29671921 |
cagttattttcttcttata----gttatagcatatatcttgttaatataaatcaatcttgatgtgggtttcatcaattttttagcacaaaataaaaatgt |
29671826 |
T |
|
| Q |
119 |
aaatttttgttttgatctaccctttgataagtgatactttttgtctcttaacannnnnnnn-gacgaaattgttccttaacatttaaaacatatcatatg |
217 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||| |
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| T |
29671825 |
aaaattttgttttgatctaccctttgataagtgatactttttgtctcttaacatttttttttgacgaaattgtcccttaacatttaaaacatgtcatatg |
29671726 |
T |
|
| Q |
218 |
tgattcgtgaaattcaaagaaatatgtcatttgtgattcgtgaaattcaactttattaatcaatttaatttcttccaaaacaaacaacatattttcatga |
317 |
Q |
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|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || |
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| T |
29671725 |
tgattcttgaaattcaaagaaatatgtcatttgtgatttgtgaaattcaactttattaattaatttaatttcttccaaaacaaacaacatattttcaaga |
29671626 |
T |
|
| Q |
318 |
tacgcaaaaaccataaacaacatatttcaaagtacgagaatatcactttacaaaaattgtcttcaaccaaattttaaacattttaaaggacgaaagcata |
417 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29671625 |
tacgcaaaaaccataaacaacatatttcaaagtacaagaatatcacttttcaaaaattgtcttcaaccaaattttaaacattttaaaggacgaaaacata |
29671526 |
T |
|
| Q |
418 |
cttaacctaacaggtctagaactt------------catatgcactttagttttctttcctctgcaaataattacatacatttttatttacggatttttc |
505 |
Q |
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|||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
29671525 |
cttaacctaacaagtctagaacttttcattgaagctcatatgcactttagttttctttcctccgcaaataattacatacatttttatttacggatttttc |
29671426 |
T |
|
| Q |
506 |
attagtattttactttcaataaaaatttaagtaactttcaacttccttggaaaacttatatttattacagaaagatagttggaatgaagaagaagagaag |
605 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
29671425 |
gttagtattttactttcaataaaaatttaagtaactttcaaattccttggaaaacttatatttattacagaaagatagttggagtgaagaagaagagaaa |
29671326 |
T |
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| Q |
606 |
atattagtagctacacatgccaaaattggaaaccgttgggctgagatagcaaagaagattccaggaagaactgaaaatgccat |
688 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29671325 |
atattagtagctacacatgccaaaattggaaaccgttgggctgagatagcaaagaagattccaggaagaactgaaaatgccat |
29671243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 754 - 798
Target Start/End: Complemental strand, 29671177 - 29671133
Alignment:
| Q |
754 |
ctaatttcaagggatcaaaacctaagtcctacatacttgaaaact |
798 |
Q |
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| T |
29671177 |
ctaatttcaagggatcaaaacctaagtcctacatacttgaaaact |
29671133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 573 - 685
Target Start/End: Complemental strand, 25379405 - 25379293
Alignment:
| Q |
573 |
cagaaagatagttggaatgaagaagaagagaagatattagtagctacacatgccaaaattggaaaccgttgggctgagatagcaaagaagattccaggaa |
672 |
Q |
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|||||||||||||||| |||||||||||| | ||| | | | || |||| || |||||||| |||||||| ||||||||||||| ||||| |||| |
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| T |
25379405 |
cagaaagatagttggagtgaagaagaagaaaggatgcttattgaaactcatggcatgattggaaatcgttgggcagagatagcaaagagaattcctggaa |
25379306 |
T |
|
| Q |
673 |
gaactgaaaatgc |
685 |
Q |
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||||||| ||||| |
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| T |
25379305 |
gaactgagaatgc |
25379293 |
T |
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Back To:
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