View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17107_low_11 (Length: 298)
Name: NF17107_low_11
Description: NF17107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17107_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 69; Significance: 5e-31; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 173 - 271
Target Start/End: Complemental strand, 1950189 - 1950092
Alignment:
| Q |
173 |
aagtgtgctaaaaggacaagcacaacacacattgatctacttaaaagacacttcataatgattctaattttagggagggc-ttttacagctccttaagag |
271 |
Q |
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| T |
1950189 |
aagtgtgctaaaaggacaagcacaacaca--ttgatctacttaagagacacttaataatgattctaattttagggagggctttttacggctccttaagag |
1950092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 161 - 271
Target Start/End: Complemental strand, 1969939 - 1969832
Alignment:
| Q |
161 |
taactcttttgtaagtgtgctaaaaggacaagcacaacacacattgatctacttaaaagacacttcataatgattctaattttagggagggcttttacag |
260 |
Q |
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| T |
1969939 |
taactctttagtaagtgtgctaaaaggacaagcacaa--cacattgatgtacttaagagatacttaataatgattctaatttt-gggaggctttttacaa |
1969843 |
T |
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| Q |
261 |
ctccttaagag |
271 |
Q |
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||||||||||| |
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| T |
1969842 |
ctccttaagag |
1969832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 271
Target Start/End: Complemental strand, 1949048 - 1948937
Alignment:
| Q |
157 |
atgttaactcttttgtaagtgtgctaaaaggacaagcacaacacacattgatctacttaaaagacacttcataatgattctaattttagggagggctttt |
256 |
Q |
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| T |
1949048 |
atgttacctctttagtatgtgtgctaaaaggacaaacacaatata--ttgatatattgaagaatcacttaacaatgttt-taattttagggagggctttt |
1948952 |
T |
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| Q |
257 |
acagctccttaagag |
271 |
Q |
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| T |
1948951 |
acaactccttaagag |
1948937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 199
Target Start/End: Complemental strand, 1938333 - 1938268
Alignment:
| Q |
134 |
ttctaatgattaacaagtttttaatgttaactcttttgtaagtgtgctaaaaggacaagcacaaca |
199 |
Q |
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| T |
1938333 |
ttctaattactaacaatttttttatgttacctctttaataagtgtgctaaagggacaaacacaaca |
1938268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 256
Target Start/End: Complemental strand, 1939436 - 1939379
Alignment:
| Q |
199 |
acacattgatctacttaaaagacacttcataatgattctaattttagggagggctttt |
256 |
Q |
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| T |
1939436 |
acacattgatctacttaagagacacttactaatgattttaattataaggaggactttt |
1939379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 256
Target Start/End: Complemental strand, 1933061 - 1933009
Alignment:
| Q |
204 |
ttgatctacttaaaagacacttcataatgattctaattttagggagggctttt |
256 |
Q |
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||||||||||||| |||||||| |||| |||||||||||| ||||| ||||| |
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| T |
1933061 |
ttgatctacttaagagacacttactaataattctaattttaaggaggactttt |
1933009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 136 - 201
Target Start/End: Original strand, 23410461 - 23410526
Alignment:
| Q |
136 |
ctaatgattaacaagtttttaatgttaactcttttgtaagtgtgctaaaaggacaagcacaacaca |
201 |
Q |
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| T |
23410461 |
ctaatgattaacaagttttttatgtcaactctttcctaggtgtgctaaaaagacaaacaaaacaca |
23410526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 249
Target Start/End: Original strand, 26342898 - 26342946
Alignment:
| Q |
201 |
acattgatctacttaaaagacacttcataatgattctaattttagggag |
249 |
Q |
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|||||||||||| || ||||| || ||||||||||||||||||||||| |
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| T |
26342898 |
acattgatctacaaaagagacatttaataatgattctaattttagggag |
26342946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 251
Target Start/End: Complemental strand, 4767055 - 4767003
Alignment:
| Q |
199 |
acacattgatctacttaaaagacacttcataatgattctaattttagggaggg |
251 |
Q |
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|||||||| ||| ||||| |||||||| ||||| ||||||| ||||||||||| |
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| T |
4767055 |
acacattgttcttcttaagagacacttaataataattctaaatttagggaggg |
4767003 |
T |
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