View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17107_low_15 (Length: 248)

Name: NF17107_low_15
Description: NF17107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17107_low_15
NF17107_low_15
[»] chr3 (10 HSPs)
chr3 (8-248)||(9402211-9402451)
chr3 (8-248)||(9420450-9420690)
chr3 (11-117)||(9432859-9432965)
chr3 (157-243)||(9432709-9432795)
chr3 (142-248)||(9357206-9357312)
chr3 (14-114)||(9617513-9617613)
chr3 (23-117)||(9494867-9494961)
chr3 (23-117)||(9407329-9407423)
chr3 (23-100)||(9343825-9343902)
chr3 (56-117)||(9425536-9425597)
[»] chr1 (3 HSPs)
chr1 (21-117)||(4439823-4439919)
chr1 (56-117)||(4428594-4428655)
chr1 (56-124)||(8814454-8814522)
[»] chr6 (2 HSPs)
chr6 (49-109)||(9159586-9159646)
chr6 (49-109)||(9170782-9170842)
[»] chr2 (1 HSPs)
chr2 (23-114)||(20694360-20694451)


Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 248
Target Start/End: Complemental strand, 9402451 - 9402211
Alignment:
Q  8 gagaagaatttaagagatagggttttgttcatagggacagaatattccttttctgcctctgcctcagatttgtgtgttcctaaagggaattgtatcatct 107  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9402451 gagaagaatttaagagatagggttttgttcatagggacaaaatattccttttctgcctctgcctcagatttgtgtgttcctaaagggaattgtatcatct 9402352  T
Q  108 ttattgatgaaatcttctctgaggatagattaagtattgttcacttggatcaagatcgtcagctttggcctttgtgcaatcatcctgaatattacgactt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9402351 ttattgatgaaatcttctctgaggatagattaagtattgttcacttggatcaagatcgtcagctttggcctttgtgcaatcatcctgaatattacgactt 9402252  T
Q  208 gttctggccccctccgaagtggatcatcaaaagccagcttc 248  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9402251 gttctggccccctccgaagtggatcatcaaaagccagcttc 9402211  T

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Target: chr3; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 8 - 248
Target Start/End: Complemental strand, 9420690 - 9420450
Alignment:
Q  8 gagaagaatttaagagatagggttttgttcatagggacagaatattccttttctgcctctgcctcagatttgtgtgttcctaaagggaattgtatcatct 107  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9420690 gagaagaatttaagagatagggttttgttcatagggacaaaatattccttttctgcctctgcctcagatttgtgtgttcctaaagggaattgtatcatct 9420591  T
Q  108 ttattgatgaaatcttctctgaggatagattaagtattgttcacttggatcaagatcgtcagctttggcctttgtgcaatcatcctgaatattacgactt 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9420590 ttattgatgaaatcttctctgaggatagattaagtattgttcacttggatcaagatcgtcagctttggcctttgtgcaatcatcctgaatattacgactt 9420491  T
Q  208 gttctggccccctccgaagtggatcatcaaaagccagcttc 248  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9420490 gttctggccccctccgaagtggatcatcaaaagccagcttc 9420450  T

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Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 11 - 117
Target Start/End: Complemental strand, 9432965 - 9432859
Alignment:
Q  11 aagaatttaagagatagggttttgttcatagggacagaatattccttttctgcctctgcctcagatttgtgtgttcctaaagggaattgtatcatcttta 110  Q
    ||||||||| |||||||||||||||||||||||   ||||||||||||||||| || ||||| |||||||||||| |  |||||||||||||||||||||    
T  9432965 aagaatttaggagatagggttttgttcatagggcttgaatattccttttctgcttcagcctcggatttgtgtgtttccgaagggaattgtatcatcttta 9432866  T
Q  111 ttgatga 117  Q
    |||||||    
T  9432865 ttgatga 9432859  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 157 - 243
Target Start/End: Complemental strand, 9432795 - 9432709
Alignment:
Q  157 tcaagatcgtcagctttggcctttgtgcaatcatcctgaatattacgacttgttctggccccctccgaagtggatcatcaaaagcca 243  Q
    ||||||| ||||||||||||||||||   || |||||||||||||| ||||||||||||| |||||| |||||||| ||||||||||    
T  9432795 tcaagatggtcagctttggcctttgtctgattatcctgaatattacaacttgttctggccacctccggagtggatcgtcaaaagcca 9432709  T

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Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 142 - 248
Target Start/End: Complemental strand, 9357312 - 9357206
Alignment:
Q  142 tattgttcacttggatcaagatcgtcagctttggcctttgtgcaatcatcctgaatattacgacttgttctggccccctccgaagtggatcatcaaaagc 241  Q
    |||||||||||||||||||||| |||| ||||     ||||   ||||||||||||||||| |||||||| |||| |||||| ||||| |||| ||||||    
T  9357312 tattgttcacttggatcaagattgtcacctttcctacttgtattatcatcctgaatattacaacttgttcgggccacctccggagtgggtcattaaaagc 9357213  T
Q  242 cagcttc 248  Q
    |||||||    
T  9357212 cagcttc 9357206  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 114
Target Start/End: Original strand, 9617513 - 9617613
Alignment:
Q  14 aatttaagagatagggttttgttcatagggacagaatattccttttctgcctctgcctcagatttgtgtgttcctaaagggaattgtatcatctttattg 113  Q
    |||||| | ||||||||||||||| | | ||  | || ||| |||||||| ||||| ||||||||||||||| | |||||||||||| ||||||||||||    
T  9617513 aatttaggggatagggttttgttccttgtgaatggatgttcattttctgcttctgcttcagatttgtgtgtttccaaagggaattgtgtcatctttattg 9617612  T
Q  114 a 114  Q
    |    
T  9617613 a 9617613  T

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Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 117
Target Start/End: Original strand, 9494867 - 9494961
Alignment:
Q  23 gatagggttttgttcatagggacagaatattccttttctgcctctgcctcagatttgtgtgttcctaaagggaattgtatcatctttattgatga 117  Q
    ||||||||||||||| | ||||  | || ||| |||||||| ||||| || |||||||| ||| | |||||||||||| ||||||||||||||||    
T  9494867 gatagggttttgttcttggggaatggatgttcgttttctgcttctgcttctgatttgtgcgtttccaaagggaattgtgtcatctttattgatga 9494961  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 117
Target Start/End: Complemental strand, 9407423 - 9407329
Alignment:
Q  23 gatagggttttgttcatagggacagaatattccttttctgcctctgcctcagatttgtgtgttcctaaagggaattgtatcatctttattgatga 117  Q
    ||||||||||||||| | | ||  | || ||| |||||||| || || || |||||||||||| | |||||||||||| || |||||||||||||    
T  9407423 gatagggttttgttctttgtgaatggatgttcattttctgcttcagcttcggatttgtgtgttgccaaagggaattgtgtcttctttattgatga 9407329  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 100
Target Start/End: Complemental strand, 9343902 - 9343825
Alignment:
Q  23 gatagggttttgttcatagggacagaatattccttttctgcctctgcctcagatttgtgtgttcctaaagggaattgt 100  Q
    ||||| ||||||||| | ||||  |||| ||| |||||||| ||||| || |||||||||||||||| ||| ||||||    
T  9343902 gatagtgttttgttcttggggaatgaatgttcgttttctgcttctgcttcggatttgtgtgttcctagaggaaattgt 9343825  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 117
Target Start/End: Complemental strand, 9425597 - 9425536
Alignment:
Q  56 ttttctgcctctgcctcagatttgtgtgttcctaaagggaattgtatcatctttattgatga 117  Q
    |||||||| || || || |||||||||||| | |||||||||||| |||||||||| |||||    
T  9425597 ttttctgcttcagcttcggatttgtgtgttgccaaagggaattgtgtcatctttatcgatga 9425536  T

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Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 117
Target Start/End: Complemental strand, 4439919 - 4439823
Alignment:
Q  21 gagatagggttttgttcatagggacagaatattccttttctgcctctgcctcagatttgtgtgttcctaaagggaattgtatcatctttattgatga 117  Q
    ||||||||||||||||  | ||||  | || ||| |||||||| ||||| || |||||||||||| |||||||||||||| ||||||||||||||||    
T  4439919 gagatagggttttgtttttggggaatggatgttcgttttctgcttctgcttcggatttgtgtgtttctaaagggaattgtgtcatctttattgatga 4439823  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 56 - 117
Target Start/End: Complemental strand, 4428655 - 4428594
Alignment:
Q  56 ttttctgcctctgcctcagatttgtgtgttcctaaagggaattgtatcatctttattgatga 117  Q
    |||||||||||||| || || |||| |||| |||||||||||||| ||||||||||||||||    
T  4428655 ttttctgcctctgcttctgagttgtctgttactaaagggaattgtgtcatctttattgatga 4428594  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 124
Target Start/End: Original strand, 8814454 - 8814522
Alignment:
Q  56 ttttctgcctctgcctcagatttgtgtgttcctaaagggaattgtatcatctttattgatgaaatcttc 124  Q
    |||||||| ||||| |  |||||||||||||| |||||||||||| | ||| |||| ||||| ||||||    
T  8814454 ttttctgcttctgctttggatttgtgtgttcccaaagggaattgtgtgatcattatggatgatatcttc 8814522  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 109
Target Start/End: Original strand, 9159586 - 9159646
Alignment:
Q  49 atattccttttctgcctctgcctcagatttgtgtgttcctaaagggaattgtatcatcttt 109  Q
    |||||| |||||||  ||||| ||||||||||||||| | |||||||||||||||||||||    
T  9159586 atattcgttttctgtttctgcttcagatttgtgtgtttccaaagggaattgtatcatcttt 9159646  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 109
Target Start/End: Complemental strand, 9170842 - 9170782
Alignment:
Q  49 atattccttttctgcctctgcctcagatttgtgtgttcctaaagggaattgtatcatcttt 109  Q
    |||||| |||||||  ||||| ||||||||||||||| |  ||||||||||||||||||||    
T  9170842 atattcgttttctgtttctgcttcagatttgtgtgtttcccaagggaattgtatcatcttt 9170782  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 114
Target Start/End: Original strand, 20694360 - 20694451
Alignment:
Q  23 gatagggttttgttcatagggacagaatattccttttctgcctctgcctcagatttgtgtgttcctaaagggaattgtatcatctttattga 114  Q
    ||||||||||||||  | ||||  | || ||| |||||||| ||||| || |||||||||||| | |||||||||||| |||||||||||||    
T  20694360 gatagggttttgtttttggggaatggatgttcgttttctgcttctgcttcggatttgtgtgttgccaaagggaattgtgtcatctttattga 20694451  T

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