View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17107_low_16 (Length: 242)
Name: NF17107_low_16
Description: NF17107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17107_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 43 - 225
Target Start/End: Complemental strand, 6612642 - 6612459
Alignment:
| Q |
43 |
attactttttggttacataatcatttcatagttgatctaaatactagtattttggttgcatgtggagaacttacc-gtgagtaacagtttcaaacatgaa |
141 |
Q |
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| T |
6612642 |
attactttttggttacataatcatttcatagttgatctaaatactagttttttgattgcatgtgtaaaacttacctgtgagtaacagtttcaaacatgaa |
6612543 |
T |
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| Q |
142 |
cacaaataatggtgagcagctaaaagctgcagctcaagcaggcaacatagatctcctctacgcagtaattgaggatgatccatt |
225 |
Q |
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| T |
6612542 |
cacaaataatggtgagaagctaaaagctgcagctcaagcaggcaacatagatctcctctacgcagtaattgatgatgatccatt |
6612459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 26088181 - 26088278
Alignment:
| Q |
130 |
ttcaaacatgaacac---aaataatggtgagcagctaaaagctgcagctcaagcaggcaacatagatctcctctacgcagtaattgaggatgatccat |
224 |
Q |
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| T |
26088181 |
ttcaaacatgaacaccacaaataatggtgaccgattgaaagctgcagctcaaacaggtgatatagatctcctctactcagtaattcaagatgatccat |
26088278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 30647888 - 30647985
Alignment:
| Q |
130 |
ttcaaacatgaacac---aaataatggtgagcagctaaaagctgcagctcaagcaggcaacatagatctcctctacgcagtaattgaggatgatccat |
224 |
Q |
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| T |
30647888 |
ttcaaacatgaacactacaaataatggagagcgattgaatgctgcagctgaagcaggtgatatagatctcctctacacagtaattcaagatgatccat |
30647985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 14726354 - 14726414
Alignment:
| Q |
164 |
aaagctgcagctcaagcaggcaacatagatctcctctacgcagtaattgaggatgatccat |
224 |
Q |
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| T |
14726354 |
aaagctgcagctctaacaggtgatatagatctcctctacacagtaattcaagatgatccat |
14726414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 26087737 - 26087677
Alignment:
| Q |
164 |
aaagctgcagctcaagcaggcaacatagatctcctctacgcagtaattgaggatgatccat |
224 |
Q |
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| T |
26087737 |
aaaggtgcagctgaagcaggtgatatagatctcctctacacagtaattcaagatgatccat |
26087677 |
T |
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