View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17107_low_2 (Length: 603)

Name: NF17107_low_2
Description: NF17107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17107_low_2
NF17107_low_2
[»] chr3 (2 HSPs)
chr3 (18-592)||(45013503-45014077)
chr3 (511-551)||(41197472-41197512)
[»] chr7 (2 HSPs)
chr7 (387-570)||(6568884-6569067)
chr7 (387-570)||(6583043-6583226)
[»] chr1 (2 HSPs)
chr1 (392-551)||(44331741-44331900)
chr1 (511-545)||(39360347-39360381)
[»] chr4 (3 HSPs)
chr4 (514-563)||(33735636-33735685)
chr4 (509-563)||(33720982-33721036)
chr4 (509-566)||(33718960-33719017)
[»] chr6 (2 HSPs)
chr6 (400-500)||(10554658-10554758)
chr6 (392-494)||(13409947-13410049)


Alignment Details
Target: chr3 (Bit Score: 567; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 567; E-Value: 0
Query Start/End: Original strand, 18 - 592
Target Start/End: Original strand, 45013503 - 45014077
Alignment:
Q  18 atccatgtcatccctccaattcattgaagggtcagaagaggaagaagaacctccatattgcattgataatctcagaagctcttgttgctgctgagatagt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  45013503 atccatgtcatccctccaattcattgaagggtcagaagaggaagaagaacctccatattgcattgacaatctcagaagctcttgttgctgctgagatagt 45013602  T
Q  118 ccagaagatgaggatgaagacggagatgtagttgataaaggttgagaattagaaacaaacatgtctctcccatagaaactaagcatatcctgattgaagt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45013603 ccagaagatgaggatgaagacggagatgtagttgataaaggttgagaattagaaacaaacatgtctctcccatagaaactaagcatatcctgattgaagt 45013702  T
Q  218 tgctacttccactagcttgaagatgtgcttgtgcagcatactgataaggatttgaatatgtttctcgagaaaagtgttgaagaggaactggattgggttg 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  45013703 tgctacttccactagcttgaagatgtgcttgtgcagcatactgataaggatttgaatatgtttctcgagaaaagtgttgaagaggaactggattggattg 45013802  T
Q  318 ttgctcgttacttgtagtagacactaggtgatgaaattgttggttatatccaaattctgttgcactttgaactctttcaggaaaattgagcttagctttg 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45013803 ttgctcgttacttgtagtagacactaggtgatgaaattgttggttatatccaaattctgttgcactttgaactctttcaggaaaattgagcttagctttg 45013902  T
Q  418 cttcctttgaatctgagtgcagcttcatcatatgcaacggctgcagcctcagccgtttcaaatgttcctagccatacccttgccgccttcttcggatcac 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45013903 cttcctttgaatctgagtgcagcttcatcatatgcaacggctgcagcctcagccgtttcaaatgttcctagccatacccttgccgccttcttcggatcac 45014002  T
Q  518 gaatctctgcagcccactttccccatggcctctgcctcacacctctatagtgtcttcgtcttacattcccttcat 592  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45014003 gaatctctgcagcccactttccccatggcctctgcctcacacctctatagtgtcttcgtcttacattcccttcat 45014077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 511 - 551
Target Start/End: Complemental strand, 41197512 - 41197472
Alignment:
Q  511 ggatcacgaatctctgcagcccactttccccatggcctctg 551  Q
    ||||| |||||||||||||||||||| |||||||| |||||    
T  41197512 ggatctcgaatctctgcagcccacttaccccatggtctctg 41197472  T

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Target: chr7 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 387 - 570
Target Start/End: Complemental strand, 6569067 - 6568884
Alignment:
Q  387 aactctttcaggaaaattgagcttagctttgcttcctttgaatctgagtgcagcttcatcatatgcaacggctgcagcctcagccgtttcaaatgttcct 486  Q
    |||||||||||| ||||| |||||||||||  | ||||||||| ||||||||||||  ||||||||||  |||||| | ||||| || ||||||||||||    
T  6569067 aactctttcagggaaattaagcttagcttttgtgcctttgaatttgagtgcagctttgtcatatgcaagagctgcatcttcagctgtatcaaatgttcct 6568968  T
Q  487 agccatacccttgccgccttcttcggatcacgaatctctgcagcccactttccccatggcctctgcctcacacctctatagtgt 570  Q
    | ||| || || || || || || || ||||| || || || ||||| ||||||||||| ||||| ||||| ||||||||||||    
T  6568967 aaccaaactctagctgctttttttgggtcacgtatttcagctgcccattttccccatggtctctgtctcactcctctatagtgt 6568884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 387 - 570
Target Start/End: Complemental strand, 6583226 - 6583043
Alignment:
Q  387 aactctttcaggaaaattgagcttagctttgcttcctttgaatctgagtgcagcttcatcatatgcaacggctgcagcctcagccgtttcaaatgttcct 486  Q
    |||||||||||| ||||| |||||||||||  | ||||||||| ||| ||||||||  ||||||||||  |||||| | ||||| || ||||||||||||    
T  6583226 aactctttcagggaaattaagcttagcttttgtgcctttgaatttgaatgcagctttgtcatatgcaagagctgcatcttcagctgtgtcaaatgttcct 6583127  T
Q  487 agccatacccttgccgccttcttcggatcacgaatctctgcagcccactttccccatggcctctgcctcacacctctatagtgt 570  Q
    | ||| || || || || || || || ||||| || || || ||||| ||||||||||| || || ||||| ||||||||||||    
T  6583126 aaccaaactctagctgctttttttgggtcacgtatttcagctgcccattttccccatggtctttgtctcactcctctatagtgt 6583043  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 392 - 551
Target Start/End: Original strand, 44331741 - 44331900
Alignment:
Q  392 tttcaggaaaattgagcttagctttgcttcctttgaatctgagtgcagcttcatcatatgcaacggctgcagcctcagccgtttcaaatgttcctagcca 491  Q
    ||||||| || ||||| || ||| || ||||| ||||||| | |||||||||||| || ||    |||||||| || || |||||||||||||| |||||    
T  44331741 tttcagggaagttgagtttcgctctgtttcctctgaatcttaatgcagcttcatcgtaagctcttgctgcagcttctgcagtttcaaatgttccaagcca 44331840  T
Q  492 tacccttgccgccttcttcggatcacgaatctctgcagcccactttccccatggcctctg 551  Q
    ||| ||||| || || |  ||||| ||||| ||||| ||||| ||||||||||| |||||    
T  44331841 tactcttgctgctttgtgtggatctcgaatttctgctgcccattttccccatggtctctg 44331900  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 511 - 545
Target Start/End: Complemental strand, 39360381 - 39360347
Alignment:
Q  511 ggatcacgaatctctgcagcccactttccccatgg 545  Q
    ||||||||||||||||||||||| |||||||||||    
T  39360381 ggatcacgaatctctgcagcccattttccccatgg 39360347  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 514 - 563
Target Start/End: Complemental strand, 33735685 - 33735636
Alignment:
Q  514 tcacgaatctctgcagcccactttccccatggcctctgcctcacacctct 563  Q
    ||||||||||| |||||||| ||||||||||||||||||||||| |||||    
T  33735685 tcacgaatctcagcagcccattttccccatggcctctgcctcactcctct 33735636  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 509 - 563
Target Start/End: Complemental strand, 33721036 - 33720982
Alignment:
Q  509 tcggatcacgaatctctgcagcccactttccccatggcctctgcctcacacctct 563  Q
    |||| ||||||||||| |||||||| ||||||||||| ||||||||||| |||||    
T  33721036 tcgggtcacgaatctcagcagcccattttccccatggtctctgcctcactcctct 33720982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 509 - 566
Target Start/End: Complemental strand, 33719017 - 33718960
Alignment:
Q  509 tcggatcacgaatctctgcagcccactttccccatggcctctgcctcacacctctata 566  Q
    |||| ||||||||||| |||||||| ||||||||||| ||||| ||||| ||||||||    
T  33719017 tcgggtcacgaatctcagcagcccattttccccatggtctctgtctcactcctctata 33718960  T

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Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 400 - 500
Target Start/End: Complemental strand, 10554758 - 10554658
Alignment:
Q  400 aaattgagcttagctttgcttcctttgaatctgagtgcagcttcatcatatgcaacggctgcagcctcagccgtttcaaatgttcctagccatacccttg 499  Q
    ||||| ||||| |||||| ||||||||||||| | ||||||||||||||| |||   |||||||| ||||| |||||||| || || ||||| || ||||    
T  10554758 aaattaagcttggctttgtttcctttgaatctcaatgcagcttcatcataagcagtagctgcagcttcagctgtttcaaaggtgccaagccacactcttg 10554659  T
Q  500 c 500  Q
    |    
T  10554658 c 10554658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 494
Target Start/End: Complemental strand, 13410049 - 13409947
Alignment:
Q  392 tttcaggaaaattgagcttagctttgcttcctttgaatctgagtgcagcttcatcatatgcaacggctgcagcctcagccgtttcaaatgttcctagcca 491  Q
    ||||||| || ||||| || ||| |||||||| ||||||| | ||||||||||||||| ||    |||||||| || || || || ||||||||||||||    
T  13410049 tttcagggaagttgagttttgctctgcttcctctgaatctcaatgcagcttcatcataagccctagctgcagcttctgctgtgtcgaatgttcctagcca 13409950  T
Q  492 tac 494  Q
    |||    
T  13409949 tac 13409947  T

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