View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17107_low_4 (Length: 425)
Name: NF17107_low_4
Description: NF17107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17107_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 141 - 409
Target Start/End: Complemental strand, 43649011 - 43648749
Alignment:
| Q |
141 |
tactaatgctgttgtgctgtaaaggtagcagcgcgcgtggcacttgaataaaattacgcttattatactcctccccctcccttcgtagttcgtacctctg |
240 |
Q |
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| T |
43649011 |
tactaatgttgttgtgctgtaaaggtagcagcgtgcgtggcacttgaataaaattacacttat---actcctccccctccgttcgtagttcgtacctctg |
43648915 |
T |
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| Q |
241 |
atctctgaaaatgtcaaatttgttgagctcatggttatggctctcccgctttcgttcttcaacttcaaagtactcgttttaccgatatcgcactctccat |
340 |
Q |
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| T |
43648914 |
atctctgaaaatgtcaaatttgttgagctcatggttatggctctcccgctttcgttcttcaacttcaaagtactcgttttaccgatatcgcactctccat |
43648815 |
T |
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| Q |
341 |
aacactcatctcaaaaactcacctacctcatccaatctcctcctcaactcacacacaacagcaaagaag |
409 |
Q |
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| T |
43648814 |
aacactcatctcaaaaactcacctacctcatccaatct---cctcaactcacacacaacaacaaagaag |
43648749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 43649134 - 43649065
Alignment:
| Q |
16 |
aatatctcttcaaattgtaaaaatgaagaaaaataatttaaatggagaggatctcaaccccaaacaaaatatca |
89 |
Q |
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| T |
43649134 |
aatatctctccaaattataaaaatgaagaaaaataatttaaatggagag----tcaaccccaaacaaaatatca |
43649065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 38283839 - 38283894
Alignment:
| Q |
17 |
atatctcttcaaattgtaaaaatgaagaaaaataatttaaatggagaggatctcaaccc |
75 |
Q |
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| T |
38283839 |
atatctctccaaattgtaaaaatggagaaa---aatttaaatgaagaggatctcaaccc |
38283894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 20485821 - 20485876
Alignment:
| Q |
17 |
atatctcttcaaattgtaaaaatgaagaaaaataatttaaatggagaggatctcaaccc |
75 |
Q |
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|||||||| ||||| ||| ||||| |||||||| ||||||||||||||||||||||| |
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| T |
20485821 |
atatctctccaaatggtagaaatggagaaaaat---ttaaatggagaggatctcaaccc |
20485876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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