View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17107_low_9 (Length: 339)
Name: NF17107_low_9
Description: NF17107
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17107_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 8e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 62 - 313
Target Start/End: Complemental strand, 31349296 - 31349047
Alignment:
| Q |
62 |
ccttaaaatcacccatgaaaacatttttctcaaatactttaagtctatcaaatgaccttaaagagatcaaaacaattcataaaatatttgtcatttccat |
161 |
Q |
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| T |
31349296 |
ccttaaaatcacccatgaaaacatttttctcaaatactttatgtctatcaaaagaccttaaagagatcaaaattgttcataaaatatttttcatttccaa |
31349197 |
T |
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| Q |
162 |
atgaatcccaacttgtttttcgttttgaaacatcttttcaaaaccaccccaaaactaggaaaatgattcagacgaattttcaacagagtctcctttgtgt |
261 |
Q |
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| T |
31349196 |
atgaatcccaacttgttttccgttttgaaacatcttttcaaaatcaccccaaaactaagaaaatgattctgacgaattttcaac--agtctcctttgtgt |
31349099 |
T |
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| Q |
262 |
ttacatcatataccagagcctctagctcagtcaaccaaacacaaattcacag |
313 |
Q |
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| T |
31349098 |
ttacatcgtatactagagcctttgactcggccaacctaacataaattcacag |
31349047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 86 - 318
Target Start/End: Complemental strand, 22629359 - 22629127
Alignment:
| Q |
86 |
ttttctcaaatactttaagtctatcaaatgaccttaaagagatcaaaacaattcataaaatatttgtcatttccatatgaatcccaacttgtttttcgtt |
185 |
Q |
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| T |
22629359 |
ttttctcaaatactttaagtcttttgagagacctttatgagatcaaaataattcataaaatatttatcattttcaaatgaatcccaacttatcttccatt |
22629260 |
T |
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| Q |
186 |
ttgaaacatcttttcaaaaccaccccaaaactaggaaaatgattcagacgaattttcaacagagtctcctttgtgtttacatcatataccagagcctcta |
285 |
Q |
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| T |
22629259 |
ttgaaacatcttttcaaaaccacccaaaagctaagaaaatgattctaacgaattttcgacagagtctcatttgtgtttacatcgtataccagagcctctg |
22629160 |
T |
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| Q |
286 |
gctcagtcaaccaaacacaaattcacaggcaaa |
318 |
Q |
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| T |
22629159 |
gctcaatcaacctagcagaaattcacagacaaa |
22629127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 86 - 318
Target Start/End: Original strand, 24892500 - 24892730
Alignment:
| Q |
86 |
ttttctcaaatactttaagtctatcaaatgaccttaaagagatcaaaacaattcataaaatatttgtcatttccatatgaatcc-caacttgtttttcgt |
184 |
Q |
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||||||||||| |||||||||| |||| | |||||||||||||||||| || | ||||||||| |||| |||| ||||| | ||| | |||| | | |
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| T |
24892500 |
ttttctcaaatgctttaagtctctcaatatatcttaaagagatcaaaacagttgaaaaaatatttatcatgtccagatgaaacttcaaaatattttccat |
24892599 |
T |
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| Q |
185 |
tttgaaacatcttttcaaaaccaccccaaaactaggaaaatgattcagacgaattttcaacagagtctcctttgtgtttacatcatataccagagcctct |
284 |
Q |
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|||||||||||||| |||||||| | ||||||| ||||||||||| || ||||||| |||||| |||||||||||||||| ||| ||||| |||| |
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| T |
24892600 |
tttgaaacatcttt--aaaaccacacaaaaactaagaaaatgattctgaagaattttgg-cagagtttcctttgtgtttacattgaatatcagagtctct |
24892696 |
T |
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| Q |
285 |
agctcagtcaaccaaacacaaattcacaggcaaa |
318 |
Q |
| |
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||||||||||| |||||||| |||||| |||| |
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| T |
24892697 |
gactcagtcaacctaacacaaactcacagacaaa |
24892730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 128 - 318
Target Start/End: Complemental strand, 13328920 - 13328731
Alignment:
| Q |
128 |
tcaaaacaattcataaaatatttgtcatttccatatgaatcccaacttgtttttcgttttgaaacatcttttcaaaaccaccccaaaactaggaaaatga |
227 |
Q |
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||||||||||| ||||||||||| | || | || ||||||||| || |||| |||| ||||||||||| |||||||||| ||||||| |||||||| |
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| T |
13328920 |
tcaaaacaattgataaaatattttttatgttcagatgaatcccgtgttattttccgttatgaaacatcttatcaaaaccactg-aaaactaagaaaatga |
13328822 |
T |
|
| Q |
228 |
ttcagacgaattttcaacagagtctcctttgtgtttacatcatataccagagcctctagctcagtcaaccaaacacaaattcacaggcaaa |
318 |
Q |
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| T |
13328821 |
ttctgacagattttagacatagtctccttcgtgcttatatcatatatctgagcccttagttcaatcaacctaacaaaaattcacagacaaa |
13328731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 289
Target Start/End: Complemental strand, 19338316 - 19338266
Alignment:
| Q |
239 |
tttcaacagagtctcctttgtgtttacatcatataccagagcctctagctc |
289 |
Q |
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|||||||||||||||||||| ||||||||| |||| | | ||||||||||| |
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| T |
19338316 |
tttcaacagagtctcctttgcgtttacatcgtatatcggtgcctctagctc |
19338266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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